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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gaq FAD Ferredoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gaq FADFerredoxin / 1.416
1gaw FADFerredoxin / 1.163
3w5u FADFerredoxin / 1.148
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.139
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.122
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.120
3vo2 FADFerredoxin--NADP reductase / 1.118
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.114
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.110
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.104
1sm4 FADFerredoxin--NADP reductase / 1.098
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.096
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.093
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.093
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.093
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.089
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.087
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.086
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.082
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.079
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.073
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.073
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.073
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.073
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.072
1que FADFerredoxin--NADP reductase 1.18.1.2 1.070
2rc5 FADFerredoxin--NADP reductase / 1.069
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.063
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.060
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.059
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.057
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.056
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.048
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.038
2rc6 FADFerredoxin--NADP reductase / 1.024
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.023
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.003
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.997
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.995
3qfc FADNADPH--cytochrome P450 reductase / 0.989
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.976
3ojw FADNADPH--cytochrome P450 reductase / 0.956
1ja1 FADNADPH--cytochrome P450 reductase / 0.954
3qfs FADNADPH--cytochrome P450 reductase / 0.919
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.905
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.899
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.898
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.898
1tll FADNitric oxide synthase, brain 1.14.13.39 0.894
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.892
1amo FADNADPH--cytochrome P450 reductase / 0.891
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.890
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.875
4y9u FADNADPH--cytochrome P450 reductase / 0.875
3qfr FADNADPH--cytochrome P450 reductase / 0.872
4y7c FADNADPH--cytochrome P450 reductase / 0.870
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.867
4yau FADNADPH--cytochrome P450 reductase / 0.864
4yaf FADNADPH--cytochrome P450 reductase / 0.863
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.860
1cqx FADFlavohemoprotein / 0.855
3qft FADNADPH--cytochrome P450 reductase / 0.846
3qe2 FADNADPH--cytochrome P450 reductase / 0.845
4y9r FADNADPH--cytochrome P450 reductase / 0.845
3ojx FADNADPH--cytochrome P450 reductase / 0.837
1j9z FADNADPH--cytochrome P450 reductase / 0.834
2bn4 FADNADPH--cytochrome P450 reductase / 0.834
1ja0 FADNADPH--cytochrome P450 reductase / 0.818
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.804
4yao FADNADPH--cytochrome P450 reductase / 0.800
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.765
2gpj FADSiderophore-interacting protein / 0.760
2bf4 FADNADPH--cytochrome P450 reductase / 0.759
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.745
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.745
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.743
2pia FMNPhthalate dioxygenase reductase / 0.737
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.734
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.733
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.731
3fpk FADFerredoxin-NADP reductase / 0.730
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.727
2ptf FMNUncharacterized protein MTH_863 / 0.726
4k1x FADNADPH:ferredoxin reductase / 0.726
2eix FADNADH-cytochrome b5 reductase / 0.724
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.709
3e4v FMNUncharacterized protein / 0.707
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.704
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.701
4ybn FADFlavin-nucleotide-binding protein / 0.700
3in6 FMNUncharacterized protein / 0.698
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.693
1rz1 FADPhenol 2-hydroxylase component B / 0.690
5af7 FADAcyl-CoA dehydrogenase / 0.688
2iml FMNUncharacterized protein / 0.687
3pft FMNFlavin reductase / 0.683
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.683
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.682
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.682
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.681
1n9l FMNPutative blue light receptor / 0.681
1gpe FADGlucose oxidase 1.1.3.4 0.680
2z6c FMNPhototropin-1 2.7.11.1 0.680
3a3b RBFLumazine protein / 0.680
2dvl FADAcyl-CoA dehydrogenase / 0.679
4f07 FADStyrene monooxygenase component 2 / 0.679
1eje FMNProtein MTH_152 / 0.678
3ge6 FMNNitroreductase / 0.677
1a8p FADFerredoxin--NADP reductase / 0.675
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.673
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.673
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.672
1gvh FADFlavohemoprotein / 0.670
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.670
4kuk RBFPutative blue-light photoreceptor / 0.670
4nm9 FADBifunctional protein PutA / 0.670
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.669
4kuo RBFPutative blue-light photoreceptor / 0.669
4iil RBFMembrane lipoprotein TpN38(b) / 0.667
4hj6 FMNLOV protein / 0.665
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.664
3utg FDAUDP-galactopyranose mutase / 0.663
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.663
4hj4 FMNLOV protein / 0.662
4nmb FADBifunctional protein PutA / 0.662
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.661
4u8k FDAUDP-galactopyranose mutase / 0.660
1pkv RBFRiboflavin synthase 2.5.1.9 0.658
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.658
3r5y F42Uncharacterized protein / 0.658
2vnh FADNADPH:ferredoxin reductase / 0.656
3hj9 FMNUncharacterized protein / 0.656
3hdy FDAUDP-galactopyranose mutase / 0.655
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.654
3a20 FMNFMN-binding protein / 0.654
4r3a RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.654
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.653
3qvr FADGlucose oxidase 1.1.3.4 0.653
3bnk FMNFlavoredoxin / 0.651
1v0j FADUDP-galactopyranose mutase 5.4.99.9 0.650