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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fdr FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fdr FADFerredoxin--NADP reductase 1.18.1.2 1.387
3fpk FADFerredoxin-NADP reductase / 1.130
1cqx FADFlavohemoprotein / 0.938
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.936
2bgj FADNADPH:ferredoxin reductase / 0.934
4b4d FADFerredoxin-NADP reductase / 0.933
2qdx FADFerredoxin--NADP+ reductase / 0.925
4fk8 FADFerredoxin--NADP reductase / 0.920
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.919
2vnj FADNADPH:ferredoxin reductase / 0.910
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.901
4yaf FADNADPH--cytochrome P450 reductase / 0.892
4y7c FADNADPH--cytochrome P450 reductase / 0.885
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.880
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.866
3crz FADFerredoxin--NADP+ reductase / 0.864
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.861
2vnk FADNADPH:ferredoxin reductase / 0.859
3qe2 FADNADPH--cytochrome P450 reductase / 0.859
2bgi FADNADPH:ferredoxin reductase / 0.855
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.855
4k1x FADNADPH:ferredoxin reductase / 0.852
3qfs FADNADPH--cytochrome P450 reductase / 0.837
2pia FMNPhthalate dioxygenase reductase / 0.828
2rc6 FADFerredoxin--NADP reductase / 0.826
1amo FADNADPH--cytochrome P450 reductase / 0.822
3qfr FADNADPH--cytochrome P450 reductase / 0.820
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.819
2vnh FADNADPH:ferredoxin reductase / 0.818
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.817
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.811
3ojw FADNADPH--cytochrome P450 reductase / 0.810
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.809
4y9u FADNADPH--cytochrome P450 reductase / 0.809
3ojx FADNADPH--cytochrome P450 reductase / 0.808
1gaw FADFerredoxin / 0.806
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.806
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.805
1ja1 FADNADPH--cytochrome P450 reductase / 0.804
2rc5 FADFerredoxin--NADP reductase / 0.802
1j9z FADNADPH--cytochrome P450 reductase / 0.795
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.792
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.790
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.788
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.788
2bf4 FADNADPH--cytochrome P450 reductase / 0.785
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.785
2bn4 FADNADPH--cytochrome P450 reductase / 0.783
4yao FADNADPH--cytochrome P450 reductase / 0.782
1tll FADNitric oxide synthase, brain 1.14.13.39 0.780
4yau FADNADPH--cytochrome P450 reductase / 0.779
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.777
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.777
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.777
4y9r FADNADPH--cytochrome P450 reductase / 0.776
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.774
1que FADFerredoxin--NADP reductase 1.18.1.2 0.772
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.771
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.764
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.762
1gvh FADFlavohemoprotein / 0.750
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.748
1sm4 FADFerredoxin--NADP reductase / 0.748
3qfc FADNADPH--cytochrome P450 reductase / 0.748
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.748
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.747
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.747
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.742
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.741
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.736
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.732
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.732
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.730
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.729
2ptf FMNUncharacterized protein MTH_863 / 0.724
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.722
2hq9 FADMll6688 protein / 0.720
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.717
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.716
4hhd FMNPhototropin-1 2.7.11.1 0.713
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.712
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.712
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.710
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.710
1a8p FADFerredoxin--NADP reductase / 0.709
1gaq FADFerredoxin / 0.709
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.702
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.702
3vo2 FADFerredoxin--NADP reductase / 0.701
2bpo FADNADPH--cytochrome P450 reductase / 0.700
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.699
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.697
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.693
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.692
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.691
3e4v FMNUncharacterized protein / 0.690
3in6 FMNUncharacterized protein / 0.690
3qft FADNADPH--cytochrome P450 reductase / 0.689
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.681
3q9t FAYUncharacterized protein / 0.681
2gpj FADSiderophore-interacting protein / 0.680
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.679
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.679
3pl8 FADPyranose 2-oxidase / 0.678
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.678
4ees FMNPhototropin-2 2.7.11.1 0.677
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.673
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.673
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.672
3w5u FADFerredoxin / 0.671
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.670
1usc FMNMonooxygenase / 0.667
1eje FMNProtein MTH_152 / 0.666
1pkv RBFRiboflavin synthase 2.5.1.9 0.666
1n9l FMNPutative blue light receptor / 0.664
3a3b RBFLumazine protein / 0.664
3cnd FADPolyamine oxidase FMS1 / 0.661
1xpq FADPolyamine oxidase FMS1 / 0.658
3bi2 FADPolyamine oxidase FMS1 / 0.657
4kx6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.657
1knr FADL-aspartate oxidase 1.4.3.16 0.653
3cn8 FADPolyamine oxidase FMS1 / 0.652