Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ea6 ADP Mismatch repair endonuclease PMS2 3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ea6 ADPMismatch repair endonuclease PMS2 3.1 0.850
3h4l ANPDNA mismatch repair protein PMS1 / 0.692
1h7u AGSMismatch repair endonuclease PMS2 3.1 0.681
4xcl AGSHeat shock cognate 90 kDa protein / 0.672
2wep ADPATP-dependent molecular chaperone HSP82 / 0.671
1byq ADPHeat shock protein HSP 90-alpha / 0.668
2o1u ANPEndoplasmin / 0.661
2o1v ADPEndoplasmin / 0.658
2yef ANPHeat shock protein HSP 90-alpha / 0.658
4xcj ADPHeat shock cognate 90 kDa protein / 0.650