scPDB - 1ea6 entry

Protein Data Bank Entry:

PDB ID : 1ea6

Resolution :2.700 Å

Experimental Method : X-ray

Deposition Date : 2001-07-10

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Mismatch repair endonuclease PMS2
ID:	PMS2_HUMAN
AC:	P54278
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	3.1

Chains:

Chain Name:	Percentage of Residues within binding site
B	100 %

Ligand binding site composition:

B-Factor:	47.417
Number of residues:	31
Including
Standard Amino Acids:	29
Non Standard Amino Acids:	1
Water Molecules:	1
Cofactors:
Metals:	MG

Cavity properties

Ligandability	Volume (Å3)
0.849	259.875

% Hydrophobic	% Polar
57.14	42.86
According to VolSite

Ligand :

HET Code:	ADP
Formula:	C10H12N5O10P2
Molecular weight:	424.177 g/mol
DrugBank ID:	-
Buried Surface Area:	47.21 %
Polar Surface area:	260.7 Å2

Number of
H-Bond Acceptors:	14
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	3
Cationic atoms:	0
Rule of Five Violation:	1
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
40.9266	46.6941	1.29452

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O1A	ND2	ASN- 45	3.22	157.22	H-Bond (Protein Donor)	false
N6	OD2	ASP- 70	2.55	147.37	H-Bond (Ligand Donor)	false
C1'	CG2	VAL- 75	4.35	0	Hydrophobic	false
C4'	CD2	LEU- 83	4.14	0	Hydrophobic	false
C1'	CD2	LEU- 83	3.63	0	Hydrophobic	false
O2A	N	LEU- 111	3.22	163.06	H-Bond (Protein Donor)	false
O3B	MG	MG- 1365	2.64	0	Metal Acceptor	false
N1	O	HOH- 2025	2.59	147.15	H-Bond (Ligand Donor)	false