2.700 Å
X-ray
2001-07-10
| Name: | Mismatch repair endonuclease PMS2 |
|---|---|
| ID: | PMS2_HUMAN |
| AC: | P54278 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 49.192 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.264 | 364.500 |
| % Hydrophobic | % Polar |
|---|---|
| 43.52 | 56.48 |
| According to VolSite | |

| HET Code: | AGS |
|---|---|
| Formula: | C10H14N5O12P3S |
| Molecular weight: | 521.231 g/mol |
| DrugBank ID: | DB02930 |
| Buried Surface Area: | 55.95 % |
| Polar Surface area: | 329.24 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 27.7187 | 59.7511 | 31.7686 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N6 | OD2 | ASP- 70 | 2.78 | 140.72 | H-Bond (Ligand Donor) |
| C4' | CD2 | LEU- 83 | 4.25 | 0 | Hydrophobic |
| C1' | CD2 | LEU- 83 | 3.47 | 0 | Hydrophobic |
| O2A | N | LEU- 111 | 3.45 | 149.55 | H-Bond (Protein Donor) |
| O3G | MG | MG- 1365 | 2.68 | 0 | Metal Acceptor |
| O3B | MG | MG- 1365 | 2.57 | 0 | Metal Acceptor |
| O1A | MG | MG- 1365 | 2.43 | 0 | Metal Acceptor |
| N1 | O | HOH- 2008 | 2.87 | 157.72 | H-Bond (Protein Donor) |