2.700 Å
X-ray
2001-07-10
Name: | Mismatch repair endonuclease PMS2 |
---|---|
ID: | PMS2_HUMAN |
AC: | P54278 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 49.192 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.264 | 364.500 |
% Hydrophobic | % Polar |
---|---|
43.52 | 56.48 |
According to VolSite |
HET Code: | AGS |
---|---|
Formula: | C10H14N5O12P3S |
Molecular weight: | 521.231 g/mol |
DrugBank ID: | DB02930 |
Buried Surface Area: | 55.95 % |
Polar Surface area: | 329.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
27.7187 | 59.7511 | 31.7686 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | OD2 | ASP- 70 | 2.78 | 140.72 | H-Bond (Ligand Donor) |
C4' | CD2 | LEU- 83 | 4.25 | 0 | Hydrophobic |
C1' | CD2 | LEU- 83 | 3.47 | 0 | Hydrophobic |
O2A | N | LEU- 111 | 3.45 | 149.55 | H-Bond (Protein Donor) |
O3G | MG | MG- 1365 | 2.68 | 0 | Metal Acceptor |
O3B | MG | MG- 1365 | 2.57 | 0 | Metal Acceptor |
O1A | MG | MG- 1365 | 2.43 | 0 | Metal Acceptor |
N1 | O | HOH- 2008 | 2.87 | 157.72 | H-Bond (Protein Donor) |