Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dxr MST Reaction center protein L chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dxr MSTReaction center protein L chain / 0.981
6prc CEBReaction center protein L chain / 0.881
7prc CETReaction center protein L chain / 0.869
5prc ATZReaction center protein L chain / 0.836
2bns MSTReaction center protein L chain / 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2bnp MSTReaction center protein L chain / 0.741
3g7f UQ1Reaction center protein L chain / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
2i5n UQ1Reaction center protein L chain / 0.657