2.000 Å
X-ray
2000-01-15
Name: | Reaction center protein L chain |
---|---|
ID: | RCEL_BLAVI |
AC: | P06009 |
Organism: | Blastochloris viridis |
Reign: | Bacteria |
TaxID: | 1079 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
H | 4 % |
L | 92 % |
M | 4 % |
B-Factor: | 23.303 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.406 | 330.750 |
% Hydrophobic | % Polar |
---|---|
72.45 | 27.55 |
According to VolSite |
HET Code: | MST |
---|---|
Formula: | C10H19N5S |
Molecular weight: | 241.356 g/mol |
DrugBank ID: | DB08215 |
Buried Surface Area: | 66.54 % |
Polar Surface area: | 88.03 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
131.425 | 69.3562 | -3.47269 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C8 | CB | ALA- 186 | 4.43 | 0 | Hydrophobic |
C8 | CB | LEU- 189 | 3.36 | 0 | Hydrophobic |
S7 | CB | HIS- 190 | 3.97 | 0 | Hydrophobic |
C15 | CD2 | LEU- 193 | 3.8 | 0 | Hydrophobic |
C16 | CB | GLU- 212 | 3.87 | 0 | Hydrophobic |
S7 | CE2 | PHE- 216 | 4.05 | 0 | Hydrophobic |
C13 | CD1 | PHE- 216 | 3.83 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 216 | 3.85 | 0 | Aromatic Face/Face |
C11 | CG2 | VAL- 220 | 4.02 | 0 | Hydrophobic |
C13 | CG2 | VAL- 220 | 4.09 | 0 | Hydrophobic |
N9 | O | TYR- 222 | 3.31 | 157.95 | H-Bond (Ligand Donor) |
C11 | CD2 | TYR- 222 | 3.92 | 0 | Hydrophobic |
N14 | OG | SER- 223 | 2.95 | 166.32 | H-Bond (Ligand Donor) |
N5 | N | ILE- 224 | 3.08 | 162.61 | H-Bond (Protein Donor) |
S7 | CD1 | ILE- 229 | 3.65 | 0 | Hydrophobic |
C12 | CD2 | LEU- 232 | 4.46 | 0 | Hydrophobic |