2.000 Å
X-ray
2000-01-15
| Name: | Reaction center protein L chain |
|---|---|
| ID: | RCEL_BLAVI |
| AC: | P06009 |
| Organism: | Blastochloris viridis |
| Reign: | Bacteria |
| TaxID: | 1079 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| H | 4 % |
| L | 92 % |
| M | 4 % |
| B-Factor: | 23.303 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.406 | 330.750 |
| % Hydrophobic | % Polar |
|---|---|
| 72.45 | 27.55 |
| According to VolSite | |

| HET Code: | MST |
|---|---|
| Formula: | C10H19N5S |
| Molecular weight: | 241.356 g/mol |
| DrugBank ID: | DB08215 |
| Buried Surface Area: | 66.54 % |
| Polar Surface area: | 88.03 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 2 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 131.425 | 69.3562 | -3.47269 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C8 | CB | ALA- 186 | 4.43 | 0 | Hydrophobic |
| C8 | CB | LEU- 189 | 3.36 | 0 | Hydrophobic |
| S7 | CB | HIS- 190 | 3.97 | 0 | Hydrophobic |
| C15 | CD2 | LEU- 193 | 3.8 | 0 | Hydrophobic |
| C16 | CB | GLU- 212 | 3.87 | 0 | Hydrophobic |
| S7 | CE2 | PHE- 216 | 4.05 | 0 | Hydrophobic |
| C13 | CD1 | PHE- 216 | 3.83 | 0 | Hydrophobic |
| DuAr | DuAr | PHE- 216 | 3.85 | 0 | Aromatic Face/Face |
| C11 | CG2 | VAL- 220 | 4.02 | 0 | Hydrophobic |
| C13 | CG2 | VAL- 220 | 4.09 | 0 | Hydrophobic |
| N9 | O | TYR- 222 | 3.31 | 157.95 | H-Bond (Ligand Donor) |
| C11 | CD2 | TYR- 222 | 3.92 | 0 | Hydrophobic |
| N14 | OG | SER- 223 | 2.95 | 166.32 | H-Bond (Ligand Donor) |
| N5 | N | ILE- 224 | 3.08 | 162.61 | H-Bond (Protein Donor) |
| S7 | CD1 | ILE- 229 | 3.65 | 0 | Hydrophobic |
| C12 | CD2 | LEU- 232 | 4.46 | 0 | Hydrophobic |