2.350 Å
X-ray
1997-08-01
| Name: | Reaction center protein L chain |
|---|---|
| ID: | RCEL_BLAVI |
| AC: | P06009 |
| Organism: | Blastochloris viridis |
| Reign: | Bacteria |
| TaxID: | 1079 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| L | 91 % |
| M | 5 % |
| H | 5 % |
| B-Factor: | 26.322 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.347 | 320.625 |
| % Hydrophobic | % Polar |
|---|---|
| 77.89 | 22.11 |
| According to VolSite | |

| HET Code: | ATZ |
|---|---|
| Formula: | C8H14ClN5 |
| Molecular weight: | 215.683 g/mol |
| DrugBank ID: | DB07392 |
| Buried Surface Area: | 62.2 % |
| Polar Surface area: | 62.73 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 2 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 131.974 | 69.517 | -3.66871 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL2 | CB | LEU- 189 | 3.84 | 0 | Hydrophobic |
| C9 | CD1 | LEU- 189 | 4.35 | 0 | Hydrophobic |
| CL2 | CB | HIS- 190 | 4.28 | 0 | Hydrophobic |
| C12 | CD2 | LEU- 193 | 3.97 | 0 | Hydrophobic |
| C13 | CB | GLU- 212 | 3.9 | 0 | Hydrophobic |
| CL2 | CE2 | PHE- 216 | 3.81 | 0 | Hydrophobic |
| C8 | CG | PHE- 216 | 4.41 | 0 | Hydrophobic |
| C9 | CD1 | PHE- 216 | 3.52 | 0 | Hydrophobic |
| DuAr | DuAr | PHE- 216 | 3.93 | 0 | Aromatic Face/Face |
| C9 | CG2 | VAL- 220 | 3.73 | 0 | Hydrophobic |
| N7 | O | TYR- 222 | 3.04 | 136.77 | H-Bond (Ligand Donor) |
| N11 | OG | SER- 223 | 2.93 | 163.23 | H-Bond (Ligand Donor) |
| N5 | N | ILE- 224 | 2.9 | 153.91 | H-Bond (Protein Donor) |
| C10 | CG2 | ILE- 224 | 4.43 | 0 | Hydrophobic |
| C13 | CB | ALA- 226 | 4.47 | 0 | Hydrophobic |
| CL2 | CG1 | ILE- 229 | 3.76 | 0 | Hydrophobic |