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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

7prc

2.650 Å

X-ray

1997-08-01

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Reaction center protein L chain
ID:RCEL_BLAVI
AC:P06009
Organism:Blastochloris viridis
Reign:Bacteria
TaxID:1079
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
L91 %
M4 %
H4 %


Ligand binding site composition:

B-Factor:16.623
Number of residues:27
Including
Standard Amino Acids: 23
Non Standard Amino Acids: 2
Water Molecules: 2
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.247330.750

% Hydrophobic% Polar
69.3930.61
According to VolSite

Ligand :
7prc_1 Structure
HET Code: CET
Formula: C10H15ClN6
Molecular weight: 254.719 g/mol
DrugBank ID: DB07552
Buried Surface Area:65.31 %
Polar Surface area: 86.52 Å2
Number of
H-Bond Acceptors: 6
H-Bond Donors: 2
Rings: 1
Aromatic rings: 1
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 5

Mass center Coordinates

XYZ
131.44168.8399-3.71094


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
CL2CBLEU- 1893.650Hydrophobic
CL2CBHIS- 1904.240Hydrophobic
C14CD2LEU- 1934.160Hydrophobic
C15CBGLU- 2123.90Hydrophobic
CL2CE2PHE- 2163.880Hydrophobic
C8CD1PHE- 2164.460Hydrophobic
DuArDuArPHE- 2163.770Aromatic Face/Face
C12CG2VAL- 2203.650Hydrophobic
N7OTYR- 2223.07138.52H-Bond
(Ligand Donor)
C12CD2TYR- 2224.120Hydrophobic
N13OGSER- 2232.8147.58H-Bond
(Ligand Donor)
N5NILE- 2242.97162.95H-Bond
(Protein Donor)
C11CBILE- 2244.010Hydrophobic
CL2CD1ILE- 2293.770Hydrophobic
C11CD2LEU- 2324.180Hydrophobic