2.700 Å
X-ray
2005-03-31
Name: | Reaction center protein L chain |
---|---|
ID: | RCEL_RHOSH |
AC: | P0C0Y8 |
Organism: | Rhodobacter sphaeroides |
Reign: | Bacteria |
TaxID: | 1063 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 87 % |
B | 9 % |
C | 4 % |
B-Factor: | 26.097 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.544 | 378.000 |
% Hydrophobic | % Polar |
---|---|
76.79 | 23.21 |
According to VolSite |
HET Code: | MST |
---|---|
Formula: | C10H19N5S |
Molecular weight: | 241.356 g/mol |
DrugBank ID: | DB08215 |
Buried Surface Area: | 65.9 % |
Polar Surface area: | 88.03 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
99.1426 | 27.1147 | 78.9697 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C8 | CB | LEU- 189 | 3.79 | 0 | Hydrophobic |
S7 | CB | HIS- 190 | 3.99 | 0 | Hydrophobic |
C15 | CD2 | LEU- 193 | 4.21 | 0 | Hydrophobic |
C16 | CB | GLU- 212 | 4.01 | 0 | Hydrophobic |
S7 | CE1 | PHE- 216 | 3.97 | 0 | Hydrophobic |
C8 | CZ | PHE- 216 | 4.2 | 0 | Hydrophobic |
C13 | CE2 | PHE- 216 | 3.45 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 216 | 3.8 | 0 | Aromatic Face/Face |
C13 | CG1 | VAL- 220 | 4.46 | 0 | Hydrophobic |
C11 | CD2 | TYR- 222 | 3.68 | 0 | Hydrophobic |
N14 | OG | SER- 223 | 2.99 | 129.8 | H-Bond (Ligand Donor) |
C12 | CG2 | ILE- 224 | 4.29 | 0 | Hydrophobic |
N5 | N | ILE- 224 | 3.17 | 154.73 | H-Bond (Protein Donor) |
C16 | CG2 | THR- 226 | 3.94 | 0 | Hydrophobic |
C12 | CD1 | ILE- 229 | 4.26 | 0 | Hydrophobic |
S7 | CD1 | ILE- 229 | 3.44 | 0 | Hydrophobic |
C12 | CD2 | LEU- 232 | 4.18 | 0 | Hydrophobic |