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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bnu AL3 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.866
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.809
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.809
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.807
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.776
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.775
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.770
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.769
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.768
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.764
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.762
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.756
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.750
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.748
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.747
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.742
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.741
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.737
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.735
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.733
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.731
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.730
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.729
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.727
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.725
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.725
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.724
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.723
4uov AZMCarbonate dehydratase / 0.722
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.722
1okn STBCarbonic anhydrase 2 4.2.1.1 0.720
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.719
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.719
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.719
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.718
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.717
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.717
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.716
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.716
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.715
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.715
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.714
4xiw AZMCarbonic anhydrase, alpha type / 0.714
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.713
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.711
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.710
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.709
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.709
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.708
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.707
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.707
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.705
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.705
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.703
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.702
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.700
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.699
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.698
3mho J43Carbonic anhydrase 2 4.2.1.1 0.698
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.697
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.695
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.694
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.691
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.691
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.690
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.690
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.686
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.685
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.683
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.679
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.678
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.678
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.677
1okm SABCarbonic anhydrase 2 4.2.1.1 0.676
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.675
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.671
3myq E27Carbonic anhydrase 2 4.2.1.1 0.667
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.666
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.663
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.662
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.662
3sax E50Carbonic anhydrase 2 4.2.1.1 0.659
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.658
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.656
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.655
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.652