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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bn1 AL5 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.856
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.803
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.790
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.770
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.769
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.762
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.759
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.754
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.753
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.749
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.742
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.733
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.732
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.732
4uov AZMCarbonate dehydratase / 0.731
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.730
1okm SABCarbonic anhydrase 2 4.2.1.1 0.730
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.726
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.725
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.724
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.724
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.723
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.722
4xiw AZMCarbonic anhydrase, alpha type / 0.719
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.718
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.715
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.713
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.712
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.711
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.710
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.707
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.705
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.705
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.705
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.704
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.702
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.702
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.701
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.701
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.700
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.700
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.698
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.696
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.696
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.695
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.694
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.694
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.694
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.693
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.693
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.692
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.691
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.690
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.690
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.690
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.688
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.688
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.688
1okn STBCarbonic anhydrase 2 4.2.1.1 0.687
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.686
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.685
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.683
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.682
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.679
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.675
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.675
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.673
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.672
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.672
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.670
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.669
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.666
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.663
3mho J43Carbonic anhydrase 2 4.2.1.1 0.663
3myq E27Carbonic anhydrase 2 4.2.1.1 0.663
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.661
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.661
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.661
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.661
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.661
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.657
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.655
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.654
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.653
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.653
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.652
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.651
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.650