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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mv4ACPBiotin carboxylase6.3.4.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mv4ACPBiotin carboxylase6.3.4.141.000
2vr1ATFBiotin carboxylase6.3.4.140.508
4mv1ADPBiotin carboxylase6.3.4.140.497
2w6qOA5Biotin carboxylase6.3.4.140.489
3g8dADPBiotin carboxylase6.3.4.140.482
2w6zL21Biotin carboxylase6.3.4.140.466
2w6oOA3Biotin carboxylase6.3.4.140.465
3jziJZLBiotin carboxylase6.3.4.140.463
2w71L23Biotin carboxylase6.3.4.140.462
2v5aLZLBiotin carboxylase6.3.4.140.460
4mv8ACPBiotin carboxylase6.3.4.140.444