Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l9i8PRRhodopsin kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4l9i8PRRhodopsin kinase/1.000
3c4zADPRhodopsin kinase/0.567
3c4wATPRhodopsin kinase/0.516
3c4xATPRhodopsin kinase/0.508
3qc9ADPRhodopsin kinase/0.489
4yhjAN2G protein-coupled receptor kinase 42.7.11.160.488
1finATPCyclin-dependent kinase 22.7.11.220.457
4bfmANPMaternal embryonic leucine zipper kinase2.7.11.10.457
4c3pACPAurora kinase A2.7.11.10.457
4ekl0RFRAC-alpha serine/threonine-protein kinase2.7.11.10.450
4fv2EK5Mitogen-activated protein kinase 12.7.11.240.449
3lltANPProtein serine/threonine kinase-1/0.447
1qpjSTUTyrosine-protein kinase Lck2.7.10.20.441
2yaaATPDeath-associated protein kinase 2/0.441
4bcmT7ZCyclin-dependent kinase 22.7.11.220.441
4ysjADPCalmodulin-like domain protein kinase/0.440
5av2KMPDeath-associated protein kinase 12.7.11.10.440