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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iocA5DPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3iocA5DPantothenate synthetase6.3.2.11.000
3ioeA7DPantothenate synthetase6.3.2.10.585
3ivxFG6Pantothenate synthetase6.3.2.10.570
3iodA6DPantothenate synthetase6.3.2.10.565
3imeBZ2Pantothenate synthetase6.3.2.10.555
1n2hPAJPantothenate synthetase6.3.2.10.545
3isjA8DPantothenate synthetase6.3.2.10.544
3iobA4DPantothenate synthetase6.3.2.10.543
3coy53HPantothenate synthetase6.3.2.10.542
3ivgFG5Pantothenate synthetase6.3.2.10.540
3imgBZ3Pantothenate synthetase6.3.2.10.539
1n2iPAJPantothenate synthetase6.3.2.10.537
4ddhMS0Pantothenate synthetase6.3.2.10.537
3imgBZ2Pantothenate synthetase6.3.2.10.527
1n2jPAFPantothenate synthetase6.3.2.10.526
3coz54HPantothenate synthetase6.3.2.10.525
3cow52HPantothenate synthetase6.3.2.10.506
2x3fAPCPantothenate synthetase/0.504
1n2gAPCPantothenate synthetase6.3.2.10.469
5hg0SAMPantothenate synthetase/0.463
5kwvANPPantothenate synthetase/0.463
1n2bPAFPantothenate synthetase6.3.2.10.459
1n2eAPCPantothenate synthetase6.3.2.10.444