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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ghsLDTAldose reductase1.1.1.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ghsLDTAldose reductase1.1.1.211.000
3ghrLDTAldose reductase1.1.1.210.910
3ghtLDTAldose reductase1.1.1.210.857
2i17LDTAldose reductase1.1.1.210.818
3ghuLDTAldose reductase1.1.1.210.795
3ld5LDTAldose reductase1.1.1.210.747
1us0LDTAldose reductase1.1.1.210.723
2i16LDTAldose reductase1.1.1.210.716
2fz8ZSTAldose reductase1.1.1.210.713
2hvoZSTAldose reductase1.1.1.210.711
2qxwLDTAldose reductase1.1.1.210.694
3g5eQ74Aldose reductase1.1.1.210.690
2duxZSTAldose reductase1.1.1.210.674
2iki388Aldose reductase1.1.1.210.660
3mb9ZSTAldose reductase1.1.1.210.650
2pdlTOLAldose reductase1.1.1.210.648
1z3n3NAAldose reductase1.1.1.210.644
2duzZSTAldose reductase1.1.1.210.639
4gca2X9Aldose reductase1.1.1.210.631
2pdp393Aldose reductase1.1.1.210.629
2dv0ZSTAldose reductase1.1.1.210.627
2hv5ZSTAldose reductase1.1.1.210.626
2pzn393Aldose reductase1.1.1.210.626
3m64393Aldose reductase1.1.1.210.623
1pwlBFIAldose reductase1.1.1.210.611
1z8962PAldose reductase1.1.1.210.607
3t423T4Aldose reductase1.1.1.210.607
2pdg47DAldose reductase1.1.1.210.606
2pdh47DAldose reductase1.1.1.210.604
3lenZSTAldose reductase1.1.1.210.603
2pdxZSTAldose reductase1.1.1.210.601
1ieiZESAldose reductase1.1.1.210.599
3lz5LDTAldose reductase1.1.1.210.592
2pdn47DAldose reductase1.1.1.210.586
2pdyFIDAldose reductase1.1.1.210.582
2pdq47DAldose reductase1.1.1.210.581
2hvnZSTAldose reductase1.1.1.210.580
3m0iZSTAldose reductase1.1.1.210.580
3mc5393Aldose reductase1.1.1.210.579
2pdbZSTAldose reductase1.1.1.210.577
2pdfZSTAldose reductase1.1.1.210.575
1t40ID5Aldose reductase1.1.1.210.567
2pdu393Aldose reductase1.1.1.210.565
4yu153NAldose reductase1.1.1.210.564
2pdc393Aldose reductase1.1.1.210.562
1frbZSTAldose reductase-related protein 2/0.561
1zuaTOLAldo-keto reductase family 1 member B101.1.10.559
1t41ID5Aldose reductase1.1.1.210.556
2fz9ZSTAldose reductase1.1.1.210.555
2iqdLPAAldose reductase1.1.1.210.555
2ikhLITAldose reductase1.1.1.210.551
2pd5ZSTAldose reductase1.1.1.210.548
2fzdTOLAldose reductase1.1.1.210.545
2inzOHPAldose reductase1.1.1.210.545
3lqlLDTAldose reductase1.1.1.210.543
2ikj393Aldose reductase1.1.1.210.541
3m4h388Aldose reductase1.1.1.210.534
2pdwFIDAldose reductase1.1.1.210.532
2f2kTGGAldose reductase1.1.1.210.522
3lboLDTAldose reductase1.1.1.210.519
1el3I84Aldose reductase1.1.1.210.518
2is72CLAldose reductase1.1.1.210.512
4ga8SBIAldo-keto reductase family 1 member B101.1.10.493
5liu388Aldo-keto reductase family 1 member B101.1.10.488
1ah3TOLAldose reductase1.1.1.210.486
3v35NTIAldose reductase1.1.1.210.477
1ry0PG2Aldo-keto reductase family 1 member C3/0.476
2fzbTOLAldose reductase1.1.1.210.475
2f3815MAldo-keto reductase family 1 member C3/0.472
2xupTZ5Acetylcholinesterase3.1.1.70.470
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.469
1lnmDTXBilin-binding protein/0.466
4dbw511Aldo-keto reductase family 1 member C3/0.466
4u163C0Muscarinic acetylcholine receptor M3/0.466
1odcA8BAcetylcholinesterase3.1.1.70.464
2nvcITAAldose reductase1.1.1.210.463
4jt81NRNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.461
4wevSUZAldo-keto reductase family 1 member B101.1.10.460
1e66HUXAcetylcholinesterase3.1.1.70.458
3e4vFMNUncharacterized protein/0.457
3r8hZOMAldo-keto reductase family 1 member C3/0.456
1x8lOXRRetinol dehydratase/0.455
2cekN8TAcetylcholinesterase3.1.1.70.455
2agtFIDAldose reductase1.1.1.210.454
1lkeDOGBilin-binding protein/0.453
5stdUNNScytalone dehydratase4.2.1.940.453
2ea4F79Methionine aminopeptidase 2/0.452
1xf0ASDAldo-keto reductase family 1 member C3/0.450
3c3xNAPEugenol synthase 11.1.1.3180.450
3cgtBCDCyclomaltodextrin glucanotransferase2.4.1.190.450
3f3y4OABile salt sulfotransferase2.8.2.140.450
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.450
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.450
3uzzTES3-oxo-5-beta-steroid 4-dehydrogenase/0.449
1yw7A41Methionine aminopeptidase 2/0.448
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
1ni4TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.447
1ni4TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.447
2ckmAA7Acetylcholinesterase3.1.1.70.447
2ct8MSPMethionine--tRNA ligase6.1.1.100.447
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.447
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.447
2xujTZ5Acetylcholinesterase3.1.1.70.447
3zv7NHGAcetylcholinesterase3.1.1.70.447
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.447
1ihiIU5Aldo-keto reductase family 1 member C2/0.446
1r5gAO1Methionine aminopeptidase 2/0.446
1zgbA1EAcetylcholinesterase3.1.1.70.446
2cbqTH2Neocarzinostatin/0.446
4d2dALA_ALA_ALADi-or tripeptide:H+ symporter/0.446
5c1gGDUHisto-blood group ABO system transferase/0.446
1nsgRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.445
1nsgRADSerine/threonine-protein kinase mTOR2.7.11.10.445
2j9fTHV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial1.2.4.40.445
2j9fTHV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial1.2.4.40.445
3gfbNADL-threonine 3-dehydrogenase/0.445
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.445
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.445
4lcnGNGCytidine and deoxycytidylate deaminase zinc-binding region/0.445
1mlzPLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.444
1s36CEIObelin/0.444
4m0f1YKAcetylcholinesterase3.1.1.70.444
4xba5GPAprataxin-like protein30.444
1yw9A84Methionine aminopeptidase 2/0.443
4kmzFOLFolate receptor beta/0.443
4k4eK4ETankyrase-12.4.2.300.442
1q83TZ5Acetylcholinesterase3.1.1.70.440
2vqqTFGHistone deacetylase 43.5.1.980.440
2xi4AFTAcetylcholinesterase3.1.1.70.440
2xuiTZ5Acetylcholinesterase3.1.1.70.440
4xo7ASDAldo-keto reductase family 1 member C2/0.440