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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3coz54HPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3coz54HPantothenate synthetase6.3.2.11.000
3coy53HPantothenate synthetase6.3.2.10.787
3iobA4DPantothenate synthetase6.3.2.10.699
3imeBZ2Pantothenate synthetase6.3.2.10.676
3imgBZ3Pantothenate synthetase6.3.2.10.657
3iodA6DPantothenate synthetase6.3.2.10.641
3ivgFG5Pantothenate synthetase6.3.2.10.640
3imgBZ2Pantothenate synthetase6.3.2.10.616
3isjA8DPantothenate synthetase6.3.2.10.610
1n2iPAJPantothenate synthetase6.3.2.10.594
3cow52HPantothenate synthetase6.3.2.10.583
3iocA5DPantothenate synthetase6.3.2.10.583
1n2hPAJPantothenate synthetase6.3.2.10.574
4ddhMS0Pantothenate synthetase6.3.2.10.565
1n2jPAFPantothenate synthetase6.3.2.10.562
3ioeA7DPantothenate synthetase6.3.2.10.554
3ivxFG6Pantothenate synthetase6.3.2.10.534
2x3fAPCPantothenate synthetase/0.527
5kwvANPPantothenate synthetase/0.487
1n2gAPCPantothenate synthetase6.3.2.10.484
5hg0SAMPantothenate synthetase/0.476
1n2eAPCPantothenate synthetase6.3.2.10.470
3ag6PAJPantothenate synthetase/0.458
1n2bPAFPantothenate synthetase6.3.2.10.455