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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3coy53HPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3coy53HPantothenate synthetase6.3.2.11.000
3coz54HPantothenate synthetase6.3.2.10.659
1n2hPAJPantothenate synthetase6.3.2.10.578
1n2iPAJPantothenate synthetase6.3.2.10.569
1n2jPAFPantothenate synthetase6.3.2.10.555
3imeBZ2Pantothenate synthetase6.3.2.10.553
3iobA4DPantothenate synthetase6.3.2.10.547
3iodA6DPantothenate synthetase6.3.2.10.543
3isjA8DPantothenate synthetase6.3.2.10.537
3imgBZ3Pantothenate synthetase6.3.2.10.535
3cow52HPantothenate synthetase6.3.2.10.533
3imgBZ2Pantothenate synthetase6.3.2.10.521
3ivgFG5Pantothenate synthetase6.3.2.10.516
3iocA5DPantothenate synthetase6.3.2.10.515
3ioeA7DPantothenate synthetase6.3.2.10.510
1n2gAPCPantothenate synthetase6.3.2.10.506
4ddhMS0Pantothenate synthetase6.3.2.10.500
3ivxFG6Pantothenate synthetase6.3.2.10.495
2x3fAPCPantothenate synthetase/0.479
1n2eAPCPantothenate synthetase6.3.2.10.473
5kwvANPPantothenate synthetase/0.453