sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2xjj | L81 | Heat shock protein HSP 90-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2xjj | L81 | Heat shock protein HSP 90-alpha | / | 1.000 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.550 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.534 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.532 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.531 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.529 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.518 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 2bsm | BSM | Heat shock protein HSP 90-alpha | / | 0.508 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.508 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.506 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2xjx | XJX | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.485 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.484 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.481 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.481 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.479 | |
| 2wi1 | ZZ2 | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.477 | |
| 4egh | 0OY | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.475 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.474 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.474 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 2yec | XQ0 | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.470 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 3cpp | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.467 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.467 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 2exl | GDM | Endoplasmin | / | 0.465 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.464 | |
| 1dz6 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.463 | |
| 2gqp | PA7 | Endoplasmin | / | 0.461 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 2yi6 | 6QM | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 3q5l | KX2 | Heat shock protein 83-1 | / | 0.461 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.460 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.459 | |
| 4nky | 3QZ | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.459 | |
| 2ye4 | 2FY | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 5cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.458 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 1iwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.456 | |
| 3ied | AN2 | HSP90 | / | 0.456 | |
| 1phe | PIY | Camphor 5-monooxygenase | 1.14.15.1 | 0.455 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 3hz1 | 37D | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 2ccu | 2D9 | Heat shock protein HSP 90-alpha | / | 0.452 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.451 | |
| 3s1d | ZIR | Cytokinin dehydrogenase 1 | 1.5.99.12 | 0.451 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.451 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 4c9o | CAM | Cytochrome P450 | / | 0.450 | |
| 6cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.448 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.447 | |
| 3fwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 4duh | RLI | DNA gyrase subunit B | / | 0.447 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.446 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 4l4d | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.444 | |
| 2yej | XQK | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 3tk3 | CPZ | Cytochrome P450 2B4 | 1.14.14.1 | 0.443 | |
| 4anx | 534 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.443 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.442 | |
| 2yjw | YJW | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 2po7 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.441 | |
| 3mnr | SD1 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 4g3r | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.441 | |
| 4l4a | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.441 | |
| 2w9s | TOP | Dihydrofolate reductase type 1 from Tn4003 | 1.5.1.3 | 0.440 | |
| 4fcq | 2N6 | Heat shock protein HSP 90-alpha | / | 0.440 |