Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 1.000 | |
2j40 | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.888 | |
2eii | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.862 | |
2j5n | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.856 | |
2ehu | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.818 | |
2bhp | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.706 | |
2ehq | NAP | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.649 | |
2bja | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.576 | |
1nzx | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.557 | |
3n82 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.556 | |
4fr8 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.546 | |
1o02 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.537 | |
4fr8 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.533 | |
5eyu | NAD | Betaine-aldehyde dehydrogenase | / | 0.531 | |
1o00 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.527 | |
3n83 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.522 | |
3iwk | NAD | Aminoaldehyde dehydrogenase | / | 0.517 | |
4pxl | NAD | Aldehyde dehydrogenase3 | / | 0.512 | |
1nzw | NAI | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.509 | |
1cw3 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.503 | |
1nzz | NAI | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.502 | |
4zz7 | NAD | Methylmalonate-semialdehyde dehydrogenase | / | 0.493 | |
2onm | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.491 | |
4i9b | NAD | Putative betaine aldehyde dehyrogenase | / | 0.488 | |
4x4l | NAI | Retinal dehydrogenase 1 | 1.2.1.36 | 0.482 | |
4i1w | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.475 | |
3iwj | NAD | Aminoaldehyde dehydrogenase | / | 0.463 | |
4nmj | NAP | Aldehyde dehydrogenase | / | 0.463 | |
1wnb | NAI | Gamma-aminobutyraldehyde dehydrogenase | 1.2.1.19 | 0.458 | |
4nmk | NAP | Aldehyde dehydrogenase | / | 0.455 | |
4pt3 | NDP | Aldehyde dehydrogenase | / | 0.453 | |
3v9l | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 0.451 | |
3ju8 | NAD | N-succinylglutamate 5-semialdehyde dehydrogenase | 1.2.1.71 | 0.447 |