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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kvsUPGUDP-glucose 4-epimerase5.1.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1kvsUPGUDP-glucose 4-epimerase5.1.3.21.000
1udbUFGUDP-glucose 4-epimerase5.1.3.20.602
1udcUFMUDP-glucose 4-epimerase5.1.3.20.588
1a9yUPGUDP-glucose 4-epimerase5.1.3.20.586
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.568
2udpUPPUDP-glucose 4-epimerase5.1.3.20.546
1xelUPGUDP-glucose 4-epimerase5.1.3.20.545
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.535
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.533
1udaUFGUDP-glucose 4-epimerase5.1.3.20.520
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.496
1i3kUPGUDP-glucose 4-epimerase/0.469