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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5fkoTDCTetracycline repressor protein class D

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5fkoTDCTetracycline repressor protein class D/1.000
5fklTDCTetracycline repressor protein class D/0.712
2o7oDXTTetracycline repressor protein class D/0.655
5fkmTDCTetracycline repressor protein class D/0.650
2trtTACTetracycline repressor protein class D/0.646
4auxXTCTetracycline repressor protein class D/0.642
2xpwOTCTetracycline repressor protein class D/0.634
2xb5I7TTetracycline repressor protein class D/0.625
2vkeTACTetracycline repressor protein class D/0.619
2vkvTDCTetracycline repressor protein class D/0.619
2xpvMIYTetracycline repressor protein class D/0.608
1orkATCTetracycline repressor protein class D/0.607
2xpuTDCTetracycline repressor protein class D/0.607
4b3aTACTetracycline repressor protein class D/0.593
2tctCTCTetracycline repressor protein class D/0.592
4d7mTDCTetracycline repressor protein class D/0.583
4abzT1CTetracycline repressor protein class D/0.569
2xrlDXTTetracycline repressor protein class D/0.539
2x9dITCTetracycline repressor protein class D/0.537
2vprTDCTetracycline repressor protein class H/0.536
4ac0MIYTetracycline repressor protein class B from transposon Tn10/0.514
4b1rITCTetracycline repressor protein class D/0.510
2fj1CTCTetracycline repressor protein class D/0.509
5fknTDCTetracycline repressor protein class D/0.476
3af2ACPPantothenate kinase2.7.1.330.461
4hmvWUBPhenazine biosynthesis protein PhzG1.40.461
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.460
4v2gITCTetracycline repressor protein class D/0.459
2gesCOKPantothenate kinase2.7.1.330.457
2gevCOKPantothenate kinase2.7.1.330.456
2ql6ADPNicotinamide riboside kinase 1/0.451
2geuCOKPantothenate kinase2.7.1.330.450
3sptUD1Bifunctional protein GlmU/0.449
2zsaADPPantothenate kinase2.7.1.330.444
1u28NADNAD(P) transhydrogenase subunit alpha part 11.6.1.20.442
2getCOKPantothenate kinase2.7.1.330.442
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.440