sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
1.450 Å
X-ray
2012-10-18
| Name: | Phenazine biosynthesis protein PhzG |
|---|---|
| ID: | PHZG_PSEFL |
| AC: | Q51793 |
| Organism: | Pseudomonas fluorescens |
| Reign: | Bacteria |
| TaxID: | 294 |
| EC Number: | 1.4 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 63 % |
| B | 37 % |
| B-Factor: | 13.411 |
|---|---|
| Number of residues: | 20 |
| Including | |
| Standard Amino Acids: | 18 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | FMN |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.580 | 695.250 |
| % Hydrophobic | % Polar |
|---|---|
| 43.20 | 56.80 |
| According to VolSite | |
| HET Code: | WUB |
|---|---|
| Formula: | C13H11N2O2 |
| Molecular weight: | 227.239 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 65.36 % |
| Polar Surface area: | 64.52 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 17.6541 | -0.0832353 | -7.32194 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O01 | N | SER- 18 | 2.78 | 150.92 | H-Bond (Protein Donor) |
| O01 | OG | SER- 18 | 2.54 | 144.52 | H-Bond (Protein Donor) |
| C05 | CG | LEU- 19 | 3.69 | 0 | Hydrophobic |
| C13 | CB | SER- 88 | 4.07 | 0 | Hydrophobic |
| DuAr | CZ | ARG- 139 | 3.94 | 18.23 | Pi/Cation |
| C05 | C6 | FMN- 301 | 3.73 | 0 | Hydrophobic |
