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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5droZH2UDP-3-O-acyl-N-acetylglucosamine deacetylase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5droZH2UDP-3-O-acyl-N-acetylglucosamine deacetylase/1.000
3p3c3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.625
2jt2C90UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.608
4oze24GUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.603
2go4TUXUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.551
4lcf1WLUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.549
2o3zAI7UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.535
4lch1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.527
3nzkC90UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.526
4fw3L52UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.507
4lcg1WMUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.500
3p3e3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.496
4fw43P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.490
3uhmRFNUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.489
4j3d1JSUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.489
2jahNDPClavaldehyde dehydrogenase/0.475
3u1y03IUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.464
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.458
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.455
3p19NDPPutative blue fluorescent protein/0.451
1qorNDPQuinone oxidoreductase 1/0.450
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.448
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
2yutNAPPutative short-chain oxidoreductase/0.446
3gqvNAPEnoyl reductase LovC10.446
3toxNAPPutative oxidoreductase/0.444
4fc7NAPPeroxisomal 2,4-dienoyl-CoA reductase1.3.1.340.444
5idwNAPShort-chain dehydrogenase/reductase SDR/0.444
1x7gNAPPutative ketoacyl reductase1.3.10.441
3b70NAPEnoyl reductase LovC10.441