2.700 Å
X-ray
2006-04-12
| Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|---|
| ID: | LPXC_AQUAE |
| AC: | O67648 |
| Organism: | Aquifex aeolicus |
| Reign: | Bacteria |
| TaxID: | 224324 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 15 % |
| B | 85 % |
| B-Factor: | 53.990 |
|---|---|
| Number of residues: | 48 |
| Including | |
| Standard Amino Acids: | 45 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.982 | 1549.125 |
| % Hydrophobic | % Polar |
|---|---|
| 48.58 | 51.42 |
| According to VolSite | |

| HET Code: | TUX |
|---|---|
| Formula: | C22H41NO7 |
| Molecular weight: | 431.563 g/mol |
| DrugBank ID: | DB01991 |
| Buried Surface Area: | 59.69 % |
| Polar Surface area: | 125.32 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 4 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 17 |
| X | Y | Z |
|---|---|---|
| -40.0771 | 67.0413 | 25.9453 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4A | CD1 | ILE- 18 | 3.51 | 0 | Hydrophobic |
| C3G | CB | HIS- 58 | 4.43 | 0 | Hydrophobic |
| O4G | ND1 | HIS- 58 | 3.07 | 157.92 | H-Bond (Protein Donor) |
| C2A | CG2 | THR- 191 | 4.35 | 0 | Hydrophobic |
| CZH | CG2 | THR- 191 | 3.76 | 0 | Hydrophobic |
| C2A | CB | ALA- 193 | 4.08 | 0 | Hydrophobic |
| O4G | OE2 | GLU- 197 | 3.34 | 161.95 | H-Bond (Ligand Donor) |
| C9A | CD1 | ILE- 198 | 3.83 | 0 | Hydrophobic |
| C2A | CD1 | ILE- 201 | 4.08 | 0 | Hydrophobic |
| CDA | CB | SER- 211 | 3.23 | 0 | Hydrophobic |
| CAA | CD2 | LEU- 212 | 3.83 | 0 | Hydrophobic |
| CCA | CG | LEU- 212 | 3.78 | 0 | Hydrophobic |
| CEA | CG | LEU- 212 | 3.81 | 0 | Hydrophobic |
| C5A | CG2 | THR- 215 | 4.41 | 0 | Hydrophobic |
| C6A | CB | THR- 215 | 4.15 | 0 | Hydrophobic |
| C9A | CG2 | VAL- 217 | 4.15 | 0 | Hydrophobic |
| O5G | NZ | LYS- 239 | 3.42 | 120.03 | H-Bond (Protein Donor) |
| OYH | ZN | ZN- 602 | 2.11 | 0 | Metal Acceptor |
| OXH | ZN | ZN- 602 | 1.89 | 0 | Metal Acceptor |