2.700 Å
X-ray
2006-04-12
Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
---|---|
ID: | LPXC_AQUAE |
AC: | O67648 |
Organism: | Aquifex aeolicus |
Reign: | Bacteria |
TaxID: | 224324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 15 % |
B | 85 % |
B-Factor: | 53.990 |
---|---|
Number of residues: | 48 |
Including | |
Standard Amino Acids: | 45 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.982 | 1549.125 |
% Hydrophobic | % Polar |
---|---|
48.58 | 51.42 |
According to VolSite |
HET Code: | TUX |
---|---|
Formula: | C22H41NO7 |
Molecular weight: | 431.563 g/mol |
DrugBank ID: | DB01991 |
Buried Surface Area: | 59.69 % |
Polar Surface area: | 125.32 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 4 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 17 |
X | Y | Z |
---|---|---|
-40.0771 | 67.0413 | 25.9453 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4A | CD1 | ILE- 18 | 3.51 | 0 | Hydrophobic |
C3G | CB | HIS- 58 | 4.43 | 0 | Hydrophobic |
O4G | ND1 | HIS- 58 | 3.07 | 157.92 | H-Bond (Protein Donor) |
C2A | CG2 | THR- 191 | 4.35 | 0 | Hydrophobic |
CZH | CG2 | THR- 191 | 3.76 | 0 | Hydrophobic |
C2A | CB | ALA- 193 | 4.08 | 0 | Hydrophobic |
O4G | OE2 | GLU- 197 | 3.34 | 161.95 | H-Bond (Ligand Donor) |
C9A | CD1 | ILE- 198 | 3.83 | 0 | Hydrophobic |
C2A | CD1 | ILE- 201 | 4.08 | 0 | Hydrophobic |
CDA | CB | SER- 211 | 3.23 | 0 | Hydrophobic |
CAA | CD2 | LEU- 212 | 3.83 | 0 | Hydrophobic |
CCA | CG | LEU- 212 | 3.78 | 0 | Hydrophobic |
CEA | CG | LEU- 212 | 3.81 | 0 | Hydrophobic |
C5A | CG2 | THR- 215 | 4.41 | 0 | Hydrophobic |
C6A | CB | THR- 215 | 4.15 | 0 | Hydrophobic |
C9A | CG2 | VAL- 217 | 4.15 | 0 | Hydrophobic |
O5G | NZ | LYS- 239 | 3.42 | 120.03 | H-Bond (Protein Donor) |
OYH | ZN | ZN- 602 | 2.11 | 0 | Metal Acceptor |
OXH | ZN | ZN- 602 | 1.89 | 0 | Metal Acceptor |