1.600 Å
X-ray
2013-06-21
| Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|---|
| ID: | LPXC_PSEAE |
| AC: | P47205 |
| Organism: | Pseudomonas aeruginosa |
| Reign: | Bacteria |
| TaxID: | 208964 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 20.769 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 1.150 | 837.000 |
| % Hydrophobic | % Polar |
|---|---|
| 51.61 | 48.39 |
| According to VolSite | |

| HET Code: | 1WL |
|---|---|
| Formula: | C23H19N5O3 |
| Molecular weight: | 413.429 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 49.57 % |
| Polar Surface area: | 133.13 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 26.1762 | -15.055 | -6.03016 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C12 | CD1 | LEU- 18 | 4.13 | 0 | Hydrophobic |
| C10 | CD2 | LEU- 18 | 3.98 | 0 | Hydrophobic |
| O01 | OG1 | THR- 190 | 2.52 | 125.4 | H-Bond (Protein Donor) |
| N06 | OG1 | THR- 190 | 2.92 | 131 | H-Bond (Ligand Donor) |
| C25 | CG2 | THR- 190 | 3.96 | 0 | Hydrophobic |
| N28 | O | PHE- 191 | 2.79 | 135.96 | H-Bond (Ligand Donor) |
| C14 | CD1 | ILE- 197 | 3.52 | 0 | Hydrophobic |
| C17 | CG2 | ILE- 197 | 4.4 | 0 | Hydrophobic |
| C13 | CG1 | ILE- 197 | 3.78 | 0 | Hydrophobic |
| C15 | CG2 | ILE- 197 | 3.62 | 0 | Hydrophobic |
| C11 | CD1 | LEU- 200 | 4.28 | 0 | Hydrophobic |
| C19 | CG1 | VAL- 211 | 3.91 | 0 | Hydrophobic |
| C24 | CB | ALA- 214 | 4.03 | 0 | Hydrophobic |
| C13 | CB | ALA- 214 | 4.26 | 0 | Hydrophobic |
| C18 | CG2 | VAL- 216 | 3.59 | 0 | Hydrophobic |
| O01 | ZN | ZN- 311 | 2.09 | 0 | Metal Acceptor |
| O04 | ZN | ZN- 311 | 2.26 | 0 | Metal Acceptor |