1.600 Å
X-ray
2013-06-21
Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
---|---|
ID: | LPXC_PSEAE |
AC: | P47205 |
Organism: | Pseudomonas aeruginosa |
Reign: | Bacteria |
TaxID: | 208964 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 20.769 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
1.150 | 837.000 |
% Hydrophobic | % Polar |
---|---|
51.61 | 48.39 |
According to VolSite |
HET Code: | 1WL |
---|---|
Formula: | C23H19N5O3 |
Molecular weight: | 413.429 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.57 % |
Polar Surface area: | 133.13 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
26.1762 | -15.055 | -6.03016 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C12 | CD1 | LEU- 18 | 4.13 | 0 | Hydrophobic |
C10 | CD2 | LEU- 18 | 3.98 | 0 | Hydrophobic |
O01 | OG1 | THR- 190 | 2.52 | 125.4 | H-Bond (Protein Donor) |
N06 | OG1 | THR- 190 | 2.92 | 131 | H-Bond (Ligand Donor) |
C25 | CG2 | THR- 190 | 3.96 | 0 | Hydrophobic |
N28 | O | PHE- 191 | 2.79 | 135.96 | H-Bond (Ligand Donor) |
C14 | CD1 | ILE- 197 | 3.52 | 0 | Hydrophobic |
C17 | CG2 | ILE- 197 | 4.4 | 0 | Hydrophobic |
C13 | CG1 | ILE- 197 | 3.78 | 0 | Hydrophobic |
C15 | CG2 | ILE- 197 | 3.62 | 0 | Hydrophobic |
C11 | CD1 | LEU- 200 | 4.28 | 0 | Hydrophobic |
C19 | CG1 | VAL- 211 | 3.91 | 0 | Hydrophobic |
C24 | CB | ALA- 214 | 4.03 | 0 | Hydrophobic |
C13 | CB | ALA- 214 | 4.26 | 0 | Hydrophobic |
C18 | CG2 | VAL- 216 | 3.59 | 0 | Hydrophobic |
O01 | ZN | ZN- 311 | 2.09 | 0 | Metal Acceptor |
O04 | ZN | ZN- 311 | 2.26 | 0 | Metal Acceptor |