1.800 Å
X-ray
2010-07-16
| Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|---|
| ID: | A1JJJ9_YERE8 |
| AC: | A1JJJ9 |
| Organism: | Yersinia enterocolitica serotype O:8 / biotype 1B |
| Reign: | Bacteria |
| TaxID: | 393305 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 20.777 |
|---|---|
| Number of residues: | 38 |
| Including | |
| Standard Amino Acids: | 37 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 1.029 | 870.750 |
| % Hydrophobic | % Polar |
|---|---|
| 53.10 | 46.90 |
| According to VolSite | |

| HET Code: | C90 |
|---|---|
| Formula: | C24H28N3O5 |
| Molecular weight: | 438.496 g/mol |
| DrugBank ID: | DB07536 |
| Buried Surface Area: | 55.75 % |
| Polar Surface area: | 112.33 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -21.9655 | -17.4928 | -34.683 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C11 | CD1 | LEU- 18 | 4.29 | 0 | Hydrophobic |
| CF1 | CD2 | LEU- 18 | 4 | 0 | Hydrophobic |
| N17 | OG1 | THR- 191 | 2.97 | 149.43 | H-Bond (Ligand Donor) |
| CF1 | CG2 | THR- 191 | 4.03 | 0 | Hydrophobic |
| C21 | CE2 | PHE- 192 | 4.02 | 0 | Hydrophobic |
| CA1 | SD | MET- 195 | 3.71 | 0 | Hydrophobic |
| C9 | CD1 | ILE- 198 | 3.93 | 0 | Hydrophobic |
| C10 | CG1 | ILE- 198 | 3.76 | 0 | Hydrophobic |
| CE2 | CG1 | ILE- 198 | 3.99 | 0 | Hydrophobic |
| CD1 | CG2 | ILE- 198 | 3.66 | 0 | Hydrophobic |
| CF | CD1 | LEU- 201 | 3.99 | 0 | Hydrophobic |
| CD1 | CB | CYS- 207 | 4.4 | 0 | Hydrophobic |
| CE2 | SG | CYS- 207 | 3.6 | 0 | Hydrophobic |
| CA1 | CZ | PHE- 212 | 3.71 | 0 | Hydrophobic |
| CA2 | CE2 | PHE- 212 | 4.39 | 0 | Hydrophobic |
| CD2 | CB | ALA- 215 | 4.33 | 0 | Hydrophobic |
| CE1 | CB | ALA- 215 | 3.84 | 0 | Hydrophobic |
| C11 | CB | ALA- 215 | 4.3 | 0 | Hydrophobic |
| CD2 | CG2 | VAL- 217 | 3.38 | 0 | Hydrophobic |
| O22 | ZN | ZN- 307 | 2.1 | 0 | Metal Acceptor |
| O24 | ZN | ZN- 307 | 2.28 | 0 | Metal Acceptor |