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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nzkC90UDP-3-O-acyl-N-acetylglucosamine deacetylase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nzkC90UDP-3-O-acyl-N-acetylglucosamine deacetylase/1.000
4lcf1WLUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.560
4fw43P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.540
4fw3L52UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.536
3p3e3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.532
4lch1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.529
4lcg1WMUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.474
3p3c3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.473
3u1y03IUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.471
4j3d1JSUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.462
5droZH2UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.452