2.010 Å
X-ray
2015-09-16
Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
---|---|
ID: | LPXC_AQUAE |
AC: | O67648 |
Organism: | Aquifex aeolicus |
Reign: | Bacteria |
TaxID: | 224324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 18.282 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.366 | 772.875 |
% Hydrophobic | % Polar |
---|---|
45.41 | 54.59 |
According to VolSite |
HET Code: | ZH2 |
---|---|
Formula: | C21H19N3O4 |
Molecular weight: | 377.393 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 52.38 % |
Polar Surface area: | 124.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 5 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-31.5146 | 7.58907 | 19.4121 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C11 | CG1 | ILE- 18 | 3.98 | 0 | Hydrophobic |
N03 | O | HIS- 58 | 3.48 | 131.2 | H-Bond (Ligand Donor) |
C10 | CG2 | THR- 179 | 4.35 | 0 | Hydrophobic |
O01 | OG1 | THR- 179 | 2.74 | 143.19 | H-Bond (Protein Donor) |
N06 | OG1 | THR- 179 | 3.06 | 144.98 | H-Bond (Ligand Donor) |
C28 | CE1 | PHE- 180 | 3.97 | 0 | Hydrophobic |
C13 | CB | ALA- 181 | 3.67 | 0 | Hydrophobic |
C12 | CB | ALA- 181 | 3.47 | 0 | Hydrophobic |
C18 | CD1 | ILE- 186 | 4.41 | 0 | Hydrophobic |
C15 | CD1 | ILE- 186 | 3.95 | 0 | Hydrophobic |
C24 | CG1 | ILE- 189 | 4.16 | 0 | Hydrophobic |
C25 | CD1 | ILE- 189 | 4.17 | 0 | Hydrophobic |
C13 | CG2 | THR- 203 | 3.94 | 0 | Hydrophobic |
C11 | CG2 | THR- 203 | 3.72 | 0 | Hydrophobic |
O27 | NZ | LYS- 227 | 3.17 | 154.55 | H-Bond (Protein Donor) |
O27 | OD2 | ASP- 230 | 2.96 | 140.77 | H-Bond (Ligand Donor) |
O01 | ZN | ZN- 401 | 2.1 | 0 | Metal Acceptor |
O04 | ZN | ZN- 401 | 2.18 | 0 | Metal Acceptor |