Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4zqmXMPInosine-5'-monophosphate dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4zqmXMPInosine-5'-monophosphate dehydrogenase/1.000
1mewXMPInosine-5'-monophosphate dehydrogenase/0.531
3c35KAIGlutamate receptor ionotropic, kainate 1/0.493
3q2jCKIAminoglycoside 3'-phosphotransferase2.7.1.950.470
1ftlDNQGlutamate receptor 2/0.468
3b7dCNIGlutamate receptor 2/0.467
1lb9DNQGlutamate receptor 2/0.463
2b82ADNClass B acid phosphatase3.1.3.20.463
2cu0XMPInosine-5'-monophosphate dehydrogenase/0.461
3hqdANPKinesin-like protein KIF11/0.454
1tllFMNNitric oxide synthase, brain1.14.13.390.451
2v34CTN4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.450
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.444
3dqrJI2Nitric oxide synthase, brain1.14.13.390.444
1t13INI6,7-dimethyl-8-ribityllumazine synthase 2/0.443
2v2qNVG4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.443
1ltzHBIPhenylalanine-4-hydroxylase1.14.16.10.442
3c34KAIGlutamate receptor ionotropic, kainate 1/0.442
1me7RVPInosine-5'-monophosphate dehydrogenase/0.441
4u0oMTALipoyl synthase 2/0.441
3nj0PYVAbscisic acid receptor PYL2/0.440