2.900 Å
X-ray
2004-04-15
| Name: | 6,7-dimethyl-8-ribityllumazine synthase 2 |
|---|---|
| ID: | RISB2_BRUAB |
| AC: | P61711 |
| Organism: | Brucella abortus biovar 1 |
| Reign: | Bacteria |
| TaxID: | 262698 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 31 % |
| D | 69 % |
| B-Factor: | 39.069 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.081 | 826.875 |
| % Hydrophobic | % Polar |
|---|---|
| 50.61 | 49.39 |
| According to VolSite | |

| HET Code: | INI |
|---|---|
| Formula: | C9H14N4O8 |
| Molecular weight: | 306.229 g/mol |
| DrugBank ID: | DB04162 |
| Buried Surface Area: | 64.37 % |
| Polar Surface area: | 196.96 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 9 |
| H-Bond Donors: | 7 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 68.165 | 73.4439 | 15.9 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2 | N | ALA- 56 | 3 | 142.23 | H-Bond (Protein Donor) |
| O9 | N | TYR- 57 | 2.75 | 153.9 | H-Bond (Protein Donor) |
| C10 | CB | TYR- 57 | 3.9 | 0 | Hydrophobic |
| C9 | CB | TYR- 57 | 3.24 | 0 | Hydrophobic |
| O10 | OE1 | GLU- 58 | 3.22 | 125.71 | H-Bond (Ligand Donor) |
| O12 | OE2 | GLU- 58 | 2.52 | 123.67 | H-Bond (Ligand Donor) |
| N3 | O | PHE- 80 | 2.69 | 170.96 | H-Bond (Ligand Donor) |
| O4 | N | ILE- 82 | 2.82 | 164.55 | H-Bond (Protein Donor) |
| C8 | CG1 | VAL- 92 | 4.16 | 0 | Hydrophobic |
| C12 | CB | LEU- 112 | 3.7 | 0 | Hydrophobic |
| O11 | O | SER- 113 | 2.91 | 160.13 | H-Bond (Ligand Donor) |
| C12 | CB | SER- 113 | 4.36 | 0 | Hydrophobic |
| O12 | N | SER- 113 | 2.85 | 158.1 | H-Bond (Protein Donor) |