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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t13 INI 6,7-dimethyl-8-ribityllumazine synthase 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.956
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.842
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.838
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.800
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.794
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.775
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.774
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.773
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.771
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.761
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.757
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.756
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.740
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.738
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.728
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.721
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.721
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.706
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.694
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.691
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.691
2f59 INI6,7-dimethyl-8-ribityllumazine synthase 1 / 0.681
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.679
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.669
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.669
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.654