1.600 Å
X-ray
2014-07-13
| Name: | Lipoyl synthase 2 |
|---|---|
| ID: | LIPA2_THEEB |
| AC: | Q8DLC2 |
| Organism: | Thermosynechococcus elongatus |
| Reign: | Bacteria |
| TaxID: | 197221 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 32.942 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.893 | 907.875 |
| % Hydrophobic | % Polar |
|---|---|
| 39.03 | 60.97 |
| According to VolSite | |

| HET Code: | MTA |
|---|---|
| Formula: | C11H15N5O3S |
| Molecular weight: | 297.333 g/mol |
| DrugBank ID: | DB02282 |
| Buried Surface Area: | 60.25 % |
| Polar Surface area: | 144.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 10.5792 | 61.9036 | 21.6517 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| S5' | CG2 | ILE- 36 | 4.09 | 0 | Hydrophobic |
| N6 | O | PHE- 69 | 3.14 | 136.99 | H-Bond (Ligand Donor) |
| C2' | CE1 | PHE- 69 | 4.1 | 0 | Hydrophobic |
| C5' | CD2 | LEU- 138 | 3.97 | 0 | Hydrophobic |
| CS | CD2 | LEU- 138 | 4.35 | 0 | Hydrophobic |
| O3' | ND2 | ASN- 169 | 3.01 | 162.47 | H-Bond (Protein Donor) |
| O2' | OE1 | GLU- 171 | 3.42 | 133.43 | H-Bond (Ligand Donor) |
| O2' | OE2 | GLU- 171 | 2.51 | 169.48 | H-Bond (Ligand Donor) |
| O3' | OE1 | GLU- 171 | 2.62 | 162.22 | H-Bond (Ligand Donor) |
| C2' | SD | MET- 210 | 3.91 | 0 | Hydrophobic |
| N6 | O | LEU- 241 | 2.77 | 170.68 | H-Bond (Ligand Donor) |
| N1 | N | LEU- 241 | 3.09 | 170.75 | H-Bond (Protein Donor) |
| CS | CB | ARG- 281 | 3.71 | 0 | Hydrophobic |
| C1' | CD | ARG- 281 | 4.24 | 0 | Hydrophobic |
| CS | CB | SER- 283 | 3.96 | 0 | Hydrophobic |