1.250 Å
X-ray
2005-10-06
Name: | Class B acid phosphatase |
---|---|
ID: | APHA_ECOLI |
AC: | P0AE22 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 3.1.3.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 9.656 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.439 | 624.375 |
% Hydrophobic | % Polar |
---|---|
42.16 | 57.84 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 54.79 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-1.03963 | 9.49763 | 26.8917 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CE1 | PHE- 56 | 4.06 | 0 | Hydrophobic |
C5' | CD2 | LEU- 71 | 4.44 | 0 | Hydrophobic |
C5' | CZ2 | TRP- 77 | 3.71 | 0 | Hydrophobic |
C4' | CH2 | TRP- 77 | 4.03 | 0 | Hydrophobic |
C5' | CB | ASP- 145 | 3.8 | 0 | Hydrophobic |
N6 | O | THR- 192 | 3.42 | 128.85 | H-Bond (Ligand Donor) |
N1 | OG1 | THR- 192 | 3.39 | 150.05 | H-Bond (Protein Donor) |
C2' | CE2 | TYR- 193 | 3.67 | 0 | Hydrophobic |
O5' | O | HOH- 1093 | 3.34 | 173.02 | H-Bond (Protein Donor) |