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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4l6gCNL1,8-cineole 2-endo-monooxygenase1.14.13.156

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4l6gCNL1,8-cineole 2-endo-monooxygenase1.14.13.1561.000
4lhtCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.867
1t2bCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.659
3fwjCAMCamphor 5-monooxygenase1.14.15.10.519
4cp4CAMCamphor 5-monooxygenase1.14.15.10.509
1iwjCAMCamphor 5-monooxygenase1.14.15.10.504
2zaxCAMCamphor 5-monooxygenase1.14.15.10.504
1yrcCAMCamphor 5-monooxygenase1.14.15.10.502
4jx1CAHCamphor 5-monooxygenase1.14.15.10.499
3fwfCAMCamphor 5-monooxygenase1.14.15.10.497
2zawCAMCamphor 5-monooxygenase1.14.15.10.494
3fwgCAMCamphor 5-monooxygenase1.14.15.10.493
2cppCAMCamphor 5-monooxygenase1.14.15.10.492
1t87CAMCamphor 5-monooxygenase1.14.15.10.491
4r21STRCytochrome P450 family 17 polypeptide 2/0.491
4tuvCPZCytochrome P450 1191.140.491
2zuiCAMCamphor 5-monooxygenase1.14.15.10.490
3l63CAMCamphor 5-monooxygenase1.14.15.10.490
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.490
6cp4CAMCamphor 5-monooxygenase1.14.15.10.490
2a1nCAMCamphor 5-monooxygenase1.14.15.10.489
4kkyCAMCamphor 5-monooxygenase1.14.15.10.489
2qboCAMCamphor 5-monooxygenase1.14.15.10.488
3gw9VNILanosterol 14-alpha-demethylase/0.487
1nooCAHCamphor 5-monooxygenase1.14.15.10.484
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.483
1gebCAMCamphor 5-monooxygenase1.14.15.10.482
3h4lANPDNA mismatch repair protein PMS1/0.482
4l4aCAMCamphor 5-monooxygenase1.14.15.10.480
4l4eCAMCamphor 5-monooxygenase1.14.15.10.480
4r20AERCytochrome P450 family 17 polypeptide 2/0.480
1zmcNADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.479
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.479
4b7dQLECytochrome P450 monooxygenase PikC/0.478
3cppCAMCamphor 5-monooxygenase1.14.15.10.477
3p62FMNPentaerythritol tetranitrate reductase/0.477
2feuCAMCamphor 5-monooxygenase1.14.15.10.476
2qbmCAMCamphor 5-monooxygenase1.14.15.10.476
3wrlCAMCamphor 5-monooxygenase1.14.15.10.476
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.475
1h51FMNPentaerythritol tetranitrate reductase/0.474
3lxiCAMCytochrome P450/0.474
3w6hAZMCarbonic anhydrase 14.2.1.10.474
1xe65FPPlasmepsin-23.4.23.390.473
2a1mCAMCamphor 5-monooxygenase1.14.15.10.471
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.471
2vwqNAPGlucose 1-dehydrogenase/0.469
2vn0TDZCytochrome P450 2C8/0.468
2x0iNAIMalate dehydrogenase/0.468
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.467
1x8vESLLanosterol 14-alpha demethylase1.14.13.700.467
2ktdPUCProstaglandin-H2 D-isomerase5.3.99.20.467
3zuyTCHTransporter/0.466
1dz4CAMCamphor 5-monooxygenase1.14.15.10.465
3wrhCAMCamphor 5-monooxygenase1.14.15.10.465
1dhjMTXDihydrofolate reductase1.5.1.30.464
4n6hEJ4Delta-type opioid receptor/0.464
3t3q9PLCytochrome P450 2A61.14.130.463
3rasNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.462
4ek1CAMCamphor 5-monooxygenase1.14.15.10.462
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.461
3p3zP3ZPutative cytochrome P450/0.460
1t2cNAIL-lactate dehydrogenase1.1.1.270.459
2iyaZIOOleandomycin glycosyltransferase/0.459
2rkvZBATrichothecene 3-O-acetyltransferase/0.458
4nmdFDABifunctional protein PutA/0.458
1xe55FEPlasmepsin-23.4.23.390.457
2y4gTIRTamL/0.457
3d4pNADL-lactate dehydrogenase 11.1.1.270.457
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.456
1vyrFMNPentaerythritol tetranitrate reductase/0.455
3ctyFADProbable thioredoxin reductase/0.454
4yaoFMNNADPH--cytochrome P450 reductase/0.454
2po7CHDFerrochelatase, mitochondrial4.99.1.10.453
3gwfNAPCyclohexanone monooxygenase/0.453
3p6oETGCamphor 5-monooxygenase1.14.15.10.453
3p99LNPLanosterol 14-alpha-demethylase/0.453
3h3r14HCollagen type IV alpha-3-binding protein/0.452
1bdmNAXMalate dehydrogenase/0.451
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.451
2ca0PXICytochrome P450 monooxygenase PikC/0.451
3t2zFADSulfide-quinone reductase/0.451
4m83ERYOleandomycin glycosyltransferase2.4.10.451
4oqyNDP(S)-imine reductase/0.451
1drbMTXDihydrofolate reductase1.5.1.30.450
1fmjRTLRetinol dehydratase/0.450
2y3rTRKTamL/0.450
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.450
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
1o9bNAIQuinate/shikimate dehydrogenase/0.449
3d8vUD1Bifunctional protein GlmU/0.449
3nr4PYVAbscisic acid receptor PYL2/0.449
1rv1IMZE3 ubiquitin-protein ligase Mdm26.3.20.448
1vi2NADQuinate/shikimate dehydrogenase/0.448
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
2y3sTIRTamL/0.448
2yejZZ3Heat shock protein HSP 90-alpha/0.448
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.448
3uylTYDProbable NDP-rhamnosyltransferase/0.448
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.448
4ktl1CQCytochrome P450/0.448
4v2gITCTetracycline repressor protein class D/0.448
4yaw2AMNADPH--cytochrome P450 reductase/0.448
2aa3AP0L-lactate dehydrogenase/0.447
3gobHXXDdmC/0.447
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.447
1f17NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.446
1llqNADNAD-dependent malic enzyme, mitochondrial1.1.1.380.446
2a94AP0L-lactate dehydrogenase1.1.1.270.446
3u9eCOALmo1369 protein/0.446
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.446
5cmsAPRO-acetyl-ADP-ribose deacetylase/0.446
1lsjNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.445
2mwgFMNBlue-light photoreceptor/0.445
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
4ejmNAPPutative zinc-binding dehydrogenase/0.445
2nnhREACytochrome P450 2C8/0.444
3nmpPYVAbscisic acid receptor PYL2/0.444
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
1h50FMNPentaerythritol tetranitrate reductase/0.443
1o0sNAINAD-dependent malic enzyme, mitochondrial1.1.1.380.443
2fy4COACholine O-acetyltransferase2.3.1.60.443
3h3fNAIL-lactate dehydrogenase A chain1.1.1.270.443
2ejvNADL-threonine 3-dehydrogenase/0.442
2rqfJH3Hemolymph juvenile hormone binding protein/0.442
3drcMTXDihydrofolate reductase1.5.1.30.442
3h3cP1EProtein-tyrosine kinase 2-beta2.7.10.20.442
3zkyWT4Isopenicillin N synthase1.21.3.10.442
4k6fNAPPutative Acetoacetyl-CoA reductase/0.442
4y8wSTRSteroid 21-hydroxylase/0.442
1guyNADMalate dehydrogenase/0.441
2abbFMNPentaerythritol tetranitrate reductase/0.441
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.441
2y60M8FIsopenicillin N synthase1.21.3.10.441
3wycNAPMeso-diaminopimelate D-dehydrogenase1.4.1.160.441
4iawLIZNeutrophil gelatinase-associated lipocalin/0.441
4imoPWZProstaglandin-H2 D-isomerase5.3.99.20.441
4o3mADPBloom syndrome protein3.6.4.120.441
3atzFMNProstaglandin F2a synthase/0.440
3bc3OPTCathepsin L13.4.22.150.440