Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/1.000
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.833
2gqwFADFerredoxin reductase/0.648
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.638
4h4tFADBiphenyl dioxygenase ferredoxin reductase subunit/0.635
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.632
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.599
4h4yFADBiphenyl dioxygenase ferredoxin reductase subunit/0.599
2gr3FADFerredoxin reductase/0.596
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/0.568
1m6iFADApoptosis-inducing factor 1, mitochondrial1.1.10.517
1d7yFADFerredoxin reductase/0.506
4h4wFADBiphenyl dioxygenase ferredoxin reductase subunit/0.503
5fs6FADApoptosis-inducing factor 1, mitochondrial1.1.10.499
2gr1FADFerredoxin reductase/0.489
4h4qFADBiphenyl dioxygenase ferredoxin reductase subunit/0.489
2gr0FADFerredoxin reductase/0.486
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.482
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.477
3lxdFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.473
4emjFADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.473
1zk7FADMercuric reductase1.16.1.10.470
1gv4FADApoptosis-inducing factor 1, mitochondrial1.1.10.465
4liiFADApoptosis-inducing factor 1, mitochondrial1.1.10.460
5fs8FADApoptosis-inducing factor 1, mitochondrial1.1.10.453
3lb8FADPutidaredoxin reductase1.18.1.50.452
1f8wFADNADH peroxidase1.11.1.10.449
2yvjFADFerredoxin reductase/0.447
3ic9FADPutative dihydrolipoamide dehydrogenase/0.444