sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4b2w | BZ0 | Glucose-1-phosphate thymidylyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4b2w | BZ0 | Glucose-1-phosphate thymidylyltransferase | / | 1.000 | |
| 4b42 | 942 | Glucose-1-phosphate thymidylyltransferase | / | 0.656 | |
| 4b5b | BBE | Glucose-1-phosphate thymidylyltransferase | / | 0.656 | |
| 4asj | N6A | Glucose-1-phosphate thymidylyltransferase | / | 0.633 | |
| 4b4g | KKT | Glucose-1-phosphate thymidylyltransferase | / | 0.610 | |
| 4b4b | GJB | Glucose-1-phosphate thymidylyltransferase | / | 0.590 | |
| 4asy | N5Y | Glucose-1-phosphate thymidylyltransferase | / | 0.556 | |
| 4ho6 | UTP | Glucose-1-phosphate thymidylyltransferase | / | 0.481 | |
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 0.467 | |
| 3vt8 | YI3 | Vitamin D3 receptor | / | 0.459 | |
| 3d8v | UD1 | Bifunctional protein GlmU | / | 0.451 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 1jio | DEB | 6-deoxyerythronolide B hydroxylase | / | 0.448 | |
| 1zdw | FLV | Prenyltransferase | / | 0.448 | |
| 3th8 | TH9 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | 2.5.1.31 | 0.448 | |
| 1noo | CAH | Camphor 5-monooxygenase | 1.14.15.1 | 0.446 | |
| 1f4f | TP3 | Thymidylate synthase | / | 0.445 | |
| 3ixp | 834 | Ecdysone receptor | / | 0.445 | |
| 3vt7 | VDX | Vitamin D3 receptor | / | 0.445 | |
| 1qbg | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.444 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.443 | |
| 1vzd | CB3 | Thymidylate synthase | / | 0.443 | |
| 1eio | GCH | Gastrotropin | / | 0.442 | |
| 1m13 | HYF | Nuclear receptor subfamily 1 group I member 2 | / | 0.442 | |
| 4ek1 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.442 | |
| 1fml | RTL | Retinol dehydratase | / | 0.441 | |
| 3umv | FAD | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.441 | |
| 3opd | HIE | Heat shock protein 83 | / | 0.440 |