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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3isjA8DPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3isjA8DPantothenate synthetase6.3.2.11.000
3ivgFG5Pantothenate synthetase6.3.2.10.616
3coy53HPantothenate synthetase6.3.2.10.611
3imeBZ2Pantothenate synthetase6.3.2.10.598
4ddhMS0Pantothenate synthetase6.3.2.10.591
3iobA4DPantothenate synthetase6.3.2.10.583
3coz54HPantothenate synthetase6.3.2.10.573
1n2iPAJPantothenate synthetase6.3.2.10.560
5kwvANPPantothenate synthetase/0.557
3iocA5DPantothenate synthetase6.3.2.10.553
1n2hPAJPantothenate synthetase6.3.2.10.548
3ivxFG6Pantothenate synthetase6.3.2.10.526
3cow52HPantothenate synthetase6.3.2.10.524
3iodA6DPantothenate synthetase6.3.2.10.524
2x3fAPCPantothenate synthetase/0.522
3imgBZ2Pantothenate synthetase6.3.2.10.522
3ioeA7DPantothenate synthetase6.3.2.10.514
5hg0SAMPantothenate synthetase/0.502
1n2gAPCPantothenate synthetase6.3.2.10.499
3ivcFG4Pantothenate synthetase6.3.2.10.492
3imgBZ3Pantothenate synthetase6.3.2.10.477
1n2jPAFPantothenate synthetase6.3.2.10.472
3ag6PAJPantothenate synthetase/0.470
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.470
1n2eAPCPantothenate synthetase6.3.2.10.462
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.462
4de50JDPantothenate synthetase6.3.2.10.459
2a84ATPPantothenate synthetase6.3.2.10.455