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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3iocA5DPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3iocA5DPantothenate synthetase6.3.2.11.000
3ioeA7DPantothenate synthetase6.3.2.10.626
3iodA6DPantothenate synthetase6.3.2.10.588
3coy53HPantothenate synthetase6.3.2.10.572
3imeBZ2Pantothenate synthetase6.3.2.10.568
3isjA8DPantothenate synthetase6.3.2.10.562
3coz54HPantothenate synthetase6.3.2.10.557
5hg0SAMPantothenate synthetase/0.557
1n2hPAJPantothenate synthetase6.3.2.10.555
3iobA4DPantothenate synthetase6.3.2.10.555
1n2iPAJPantothenate synthetase6.3.2.10.553
3ivxFG6Pantothenate synthetase6.3.2.10.550
3imgBZ2Pantothenate synthetase6.3.2.10.539
3ivgFG5Pantothenate synthetase6.3.2.10.523
3ag6PAJPantothenate synthetase/0.508
2x3fAPCPantothenate synthetase/0.507
3cow52HPantothenate synthetase6.3.2.10.499
2a84ATPPantothenate synthetase6.3.2.10.485
4de50JDPantothenate synthetase6.3.2.10.481
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.478
3ivcFG4Pantothenate synthetase6.3.2.10.477
1n2jPAFPantothenate synthetase6.3.2.10.474
1n2gAPCPantothenate synthetase6.3.2.10.465
4ddhMS0Pantothenate synthetase6.3.2.10.459
5f8eSAHPossible transcriptional regulatory protein/0.448
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.441
1n2eAPCPantothenate synthetase6.3.2.10.440