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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.121.000
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.646
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.631
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.628
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.625
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.615
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.614
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.607
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.603
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.600
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.589
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.577
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.573
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.571
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.570
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.566
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.563
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.558
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.556
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.553
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.551
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.541
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.539
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.539
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.539
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.538
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.535
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.533
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.529
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.526
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.525
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.519
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.517
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.512
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.509
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.502
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.500
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.499
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.495
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.489
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.488
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.484
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.483
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.481
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.480
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.478
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.476
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.475
3lqfNADGalactitol dehydrogenase/0.468
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.466
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.465
2d2iNAPGlyceraldehyde-3-phosphate dehydrogenase/0.462
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.460
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.459
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.456
4q71FADBifunctional protein PutA/0.456
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.455
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.455
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.455
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.453
4q73FADBifunctional protein PutA/0.453
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.452
1jioDEB6-deoxyerythronolide B hydroxylase/0.450
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.449
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.446
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
1j0xNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.444
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.444
3slkNDPPolyketide synthase extender module 2/0.444
3sz0FADSulfide-quinone reductase/0.444
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.443
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.443
1k6cMK1Gag-Pol polyprotein3.4.23.160.442
1tj0FADBifunctional protein PutA1.5.5.20.441
4b7dQLECytochrome P450 monooxygenase PikC/0.440