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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.291.000
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.563
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.556
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.539
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.531
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.530
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.518
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.497
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.494
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.492
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.491
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.491
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.486
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.483
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.482
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.481
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.480
4iarERM5-hydroxytryptamine receptor 1B/0.473
1r5yDQUQueuine tRNA-ribosyltransferase2.4.2.290.468
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.468
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.467
5dp2NAPCurF/0.466
3ivgFG5Pantothenate synthetase6.3.2.10.463
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.462
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.456
4fhf0TTSpore photoproduct lyase/0.455
5f54TMPSingle-stranded-DNA-specific exonuclease/0.455
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.454
3vv8B02Beta-secretase 13.4.23.460.454
1c3x8IGPurine nucleoside phosphorylase2.4.2.10.451
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
4rh10TTSpore photoproduct lyase/0.449
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.447
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.446
1ygjRMCPyridoxal kinase2.7.1.350.446
3isjA8DPantothenate synthetase6.3.2.10.446
4iaq2GM5-hydroxytryptamine receptor 1B/0.446
2g28TDKPyruvate dehydrogenase E1 component1.2.4.10.443
2rcwAAIPoly [ADP-ribose] polymerase 12.4.2.300.443
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.443
5bp9SAHPutative methyltransferase protein/0.443
1cjwCOTSerotonin N-acetyltransferase/0.442
2c94TSF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.442
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.441