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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3eblGA4Gibberellin receptor GID1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3eblGA4Gibberellin receptor GID1/1.000
3ed1GA3Gibberellin receptor GID1/0.689
2zshGA3Gibberellin receptor GID1A30.616
2zsiGA4Gibberellin receptor GID1A30.542
2nnqT4BFatty acid-binding protein, adipocyte/0.483
1f20NAPNitric oxide synthase, brain1.14.13.390.477
3oqfS51Renin3.4.23.150.477
3aezGDPPantothenate kinase2.7.1.330.476
3d8vUD1Bifunctional protein GlmU/0.474
3q1kADPD-alanine--D-alanine ligase A6.3.2.40.474
2zsaADPPantothenate kinase2.7.1.330.469
3zgz84TLeucine--tRNA ligase/0.469
2yxuATPPyridoxal kinase2.7.1.350.467
3junAJDPhenazine biosynthesis protein A/B/0.465
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.461
3fr4F8AFatty acid-binding protein, adipocyte/0.460
3hu1AGSTransitional endoplasmic reticulum ATPase3.6.4.60.459
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.457
1tkaN3TTransketolase 12.2.1.10.453
4yqfGDPSeptin-9/0.453
1towCRZFatty acid-binding protein, adipocyte/0.452
3ibqATPPyridoxal kinase/0.452
3hk1B64Fatty acid-binding protein, adipocyte/0.450
4mv1ADPBiotin carboxylase6.3.4.140.450
5a65TPPThiamine-triphosphatase3.6.1.280.450
1i24UPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.449
2rqfJH3Hemolymph juvenile hormone binding protein/0.449
5iqfGDPBifunctional AAC/APH2.3.10.449
1hfqMOTDihydrofolate reductase1.5.1.30.448
1nzdUPGDNA beta-glucosyltransferase/0.448
3hdyGDUUDP-galactopyranose mutase/0.448
3af1GDPPantothenate kinase2.7.1.330.447
3fr28CAFatty acid-binding protein, adipocyte/0.447
3to3ATPPetrobactin biosynthesis protein AsbB/0.447
1yreCOAUncharacterized protein/0.446
3fhyATPPyridoxal kinase2.7.1.350.446
3fp0FP015-O-acetyltransferase/0.446
3zu2NAIEnoyl-[acyl-carrier-protein] reductase [NADH]/0.446
2nq8ZIDEnoyl-ACP reductase/0.445
2vutNADNitrogen metabolite repression protein nmrA/0.445
4dk70KSOxysterols receptor LXR-beta/0.445
5iqiGNPBifunctional AAC/APH2.3.10.445
2zcvNDPQuinone oxidoreductase 21.6.5.20.444
3oqkS52Renin3.4.23.150.444
1l7x700Glycogen phosphorylase, liver form2.4.1.10.443
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.443
4g3sUD1Bifunctional protein GlmU/0.443
4m2bUPGUDP-glucose pyrophosphorylase/0.443
3otwCOAPhosphopantetheine adenylyltransferase/0.442
3zoiM2WIsopenicillin N synthase1.21.3.10.442
4ycpFMNtRNA-dihydrouridine(16) synthase/0.442
1gtrATPGlutamine--tRNA ligase6.1.1.180.441
2f3rG5PGuanylate kinase2.7.4.80.441
2i4qUA4Renin3.4.23.150.441
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.441
3sptUD1Bifunctional protein GlmU/0.441
4o4fATPKinase/0.441
1trkTPPTransketolase 12.2.1.10.440
3fr5I4AFatty acid-binding protein, adipocyte/0.440