1.900 Å
X-ray
2008-09-02
| Name: | Gibberellin receptor GID1 |
|---|---|
| ID: | GID1_ORYSJ |
| AC: | Q6L545 |
| Organism: | Oryza sativa subsp. japonica |
| Reign: | Eukaryota |
| TaxID: | 39947 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| F | 100 % |
| B-Factor: | 23.550 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.732 | 438.750 |
| % Hydrophobic | % Polar |
|---|---|
| 49.23 | 50.77 |
| According to VolSite | |

| HET Code: | GA3 |
|---|---|
| Formula: | C19H21O6 |
| Molecular weight: | 345.366 g/mol |
| DrugBank ID: | DB07814 |
| Buried Surface Area: | 78.15 % |
| Polar Surface area: | 106.89 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 2 |
| Rings: | 5 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 35.9559 | 44.271 | 56.0726 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C11 | CG2 | ILE- 24 | 3.72 | 0 | Hydrophobic |
| C12 | CB | LYS- 28 | 4.15 | 0 | Hydrophobic |
| C15 | CD2 | TYR- 31 | 4.2 | 0 | Hydrophobic |
| C9 | CE2 | TYR- 31 | 4.45 | 0 | Hydrophobic |
| O71 | N | GLY- 122 | 3.12 | 122.03 | H-Bond (Protein Donor) |
| O71 | OG | SER- 123 | 2.71 | 167.64 | H-Bond (Protein Donor) |
| C3 | CD1 | ILE- 133 | 3.8 | 0 | Hydrophobic |
| C3 | CZ | TYR- 134 | 4.48 | 0 | Hydrophobic |
| O31 | OH | TYR- 134 | 2.58 | 141.88 | H-Bond (Ligand Donor) |
| O71 | OG | SER- 198 | 3.11 | 125.2 | H-Bond (Protein Donor) |
| O72 | OG | SER- 198 | 2.81 | 175.33 | H-Bond (Protein Donor) |
| C18 | CB | SER- 198 | 3.95 | 0 | Hydrophobic |
| C12 | CB | PHE- 245 | 4.49 | 0 | Hydrophobic |
| C14 | CG2 | VAL- 246 | 3.92 | 0 | Hydrophobic |
| O13 | OD2 | ASP- 250 | 3.08 | 156.87 | H-Bond (Ligand Donor) |
| C3 | CD1 | LEU- 330 | 4.07 | 0 | Hydrophobic |