1.800 Å
X-ray
2008-09-10
| Name: | Gibberellin receptor GID1A |
|---|---|
| ID: | GID1A_ARATH |
| AC: | Q9MAA7 |
| Organism: | Arabidopsis thaliana |
| Reign: | Eukaryota |
| TaxID: | 3702 |
| EC Number: | 3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 13.437 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.485 | 408.375 |
| % Hydrophobic | % Polar |
|---|---|
| 44.63 | 55.37 |
| According to VolSite | |

| HET Code: | GA3 |
|---|---|
| Formula: | C19H21O6 |
| Molecular weight: | 345.366 g/mol |
| DrugBank ID: | DB07814 |
| Buried Surface Area: | 75.25 % |
| Polar Surface area: | 106.89 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 2 |
| Rings: | 5 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 51.0328 | 59.4522 | 37.3697 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C12 | CB | LYS- 28 | 4.28 | 0 | Hydrophobic |
| C15 | CD2 | TYR- 31 | 3.78 | 0 | Hydrophobic |
| C10 | CE2 | TYR- 31 | 4.49 | 0 | Hydrophobic |
| O71 | OG | SER- 116 | 2.68 | 159.82 | H-Bond (Protein Donor) |
| C3 | CD1 | ILE- 126 | 4.1 | 0 | Hydrophobic |
| O31 | OH | TYR- 127 | 2.83 | 172.39 | H-Bond (Ligand Donor) |
| O72 | OG | SER- 191 | 2.95 | 145.62 | H-Bond (Protein Donor) |
| C18 | CB | SER- 191 | 3.84 | 0 | Hydrophobic |
| C14 | CG2 | VAL- 239 | 3.95 | 0 | Hydrophobic |
| C3 | CD1 | LEU- 323 | 4.23 | 0 | Hydrophobic |