Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3e32ED2Protein farnesyltransferase subunit beta2.5.1.58

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3e32ED2Protein farnesyltransferase subunit beta2.5.1.581.000
3e33ED7Protein farnesyltransferase subunit beta2.5.1.580.663
3e30ED4Protein farnesyltransferase subunit beta2.5.1.580.659
3eu5GBOProtein farnesyltransferase subunit beta2.5.1.580.650
1n95HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.640
1n95HFPProtein farnesyltransferase subunit beta2.5.1.580.640
1s63778Protein farnesyltransferase subunit beta2.5.1.580.640
1sa4JANProtein farnesyltransferase subunit beta2.5.1.580.640
1jcq739Protein farnesyltransferase subunit beta2.5.1.580.639
1mzcBNEProtein farnesyltransferase subunit beta2.5.1.580.639
1ld8U49Protein farnesyltransferase subunit beta2.5.1.580.632
1o1s1NHProtein farnesyltransferase subunit beta2.5.1.580.629
1nl4HFPProtein farnesyltransferase subunit beta2.5.1.580.623
1sa5BMVProtein farnesyltransferase subunit beta2.5.1.580.611
1n95FTHProtein farnesyltransferase subunit beta2.5.1.580.606
4lnbED5CaaX farnesyltransferase beta subunit Ram1/0.597
4gtm7TMProtein farnesyltransferase subunit beta2.5.1.580.589
3ksqZ96Protein farnesyltransferase subunit beta2.5.1.580.583
4gtp7TPProtein farnesyltransferase subunit beta2.5.1.580.576
2r2lPB9Protein farnesyltransferase subunit beta2.5.1.580.569
3pz43PZProtein farnesyltransferase subunit beta2.5.1.580.546
1s64778Geranylgeranyl transferase type-1 subunit beta2.5.1.590.544
2h6iCYS_VAL_LEU_SER_GERProtein farnesyltransferase subunit beta2.5.1.580.534
3hxfBD9Geranylgeranyl transferase type-2 subunit beta2.5.1.600.530
1ni1HFPProtein farnesyltransferase subunit beta2.5.1.580.513
1qbqHFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.513
1qbqHFPProtein farnesyltransferase subunit beta2.5.1.580.513
1n4qLYS_CYS_VAL_ILE_LEUGeranylgeranyl transferase type-1 subunit beta2.5.1.590.510
1ni12C5Protein farnesyltransferase subunit beta2.5.1.580.508
3pz23PZGeranylgeranyl transferase type-2 subunit beta2.5.1.600.499
3sfy3FYUncharacterized protein/0.496
1n4sCYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta2.5.1.590.476
3kslSZHProtein farnesyltransferase subunit beta2.5.1.580.469
4gto7TOProtein farnesyltransferase subunit beta2.5.1.580.459
5irnADPNucleotide binding oligomerization domain containing 2/0.450
3gwfNAPCyclohexanone monooxygenase/0.445
1x1aSAMC-20 methyltransferase/0.441