Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2x3fAPCPantothenate synthetase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2x3fAPCPantothenate synthetase/1.000
3ivxFG6Pantothenate synthetase6.3.2.10.573
1n2iPAJPantothenate synthetase6.3.2.10.570
1n2hPAJPantothenate synthetase6.3.2.10.565
3ioeA7DPantothenate synthetase6.3.2.10.550
3coy53HPantothenate synthetase6.3.2.10.546
3ivgFG5Pantothenate synthetase6.3.2.10.543
5hg0SAMPantothenate synthetase/0.543
3isjA8DPantothenate synthetase6.3.2.10.535
3coz54HPantothenate synthetase6.3.2.10.533
3cow52HPantothenate synthetase6.3.2.10.528
1n2eAPCPantothenate synthetase6.3.2.10.519
3iocA5DPantothenate synthetase6.3.2.10.512
1n2gAPCPantothenate synthetase6.3.2.10.511
3ag6PAJPantothenate synthetase/0.509
3iobA4DPantothenate synthetase6.3.2.10.502
4ddhMS0Pantothenate synthetase6.3.2.10.500
3iodA6DPantothenate synthetase6.3.2.10.498
5kwvANPPantothenate synthetase/0.489
1n2jPAFPantothenate synthetase6.3.2.10.484
3qttANPPantothenate synthetase/0.475
3ivcFG4Pantothenate synthetase6.3.2.10.454
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.450
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.446
3imgBZ2Pantothenate synthetase6.3.2.10.444
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.443