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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2p9gNAID-3-phosphoglycerate dehydrogenase1.1.1.95

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2p9gNAID-3-phosphoglycerate dehydrogenase1.1.1.951.000
2pa3NAID-3-phosphoglycerate dehydrogenase1.1.1.950.604
2p9cNAID-3-phosphoglycerate dehydrogenase1.1.1.950.591
1ybaNADD-3-phosphoglycerate dehydrogenase1.1.1.950.532
1psdNADD-3-phosphoglycerate dehydrogenase1.1.1.950.513
2p9eNAID-3-phosphoglycerate dehydrogenase1.1.1.950.506
2eklNADD-3-phosphoglycerate dehydrogenase/0.480
1dxyNADD-2-hydroxyisocaproate dehydrogenase1.1.10.475
4zgsNADPutative D-lactate dehydrogenase/0.472
1j49NADD-lactate dehydrogenase1.1.1.280.469
3oetNADErythronate-4-phosphate dehydrogenase/0.463
1nzdUPGDNA beta-glucosyltransferase/0.462
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.456
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.452
2z9dFMNFMN-dependent NADH-azoreductase/0.450
1wwkNAD307aa long hypothetical phosphoglycerate dehydrogenase/0.448
4h6rFDAProline dehydrogenase/0.446
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
4a99FADTetX family tetracycline inactivation enzyme/0.444
2jn3JN3Fatty acid-binding protein, liver/0.442
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.440
5dt9NADErythronate-4-phosphate dehydrogenase/0.440