2.460 Å
X-ray
2015-04-23
| Name: | Putative D-lactate dehydrogenase |
|---|---|
| ID: | B0LUZ5_CHLRE |
| AC: | B0LUZ5 |
| Organism: | Chlamydomonas reinhardtii |
| Reign: | Eukaryota |
| TaxID: | 3055 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 59.528 |
|---|---|
| Number of residues: | 40 |
| Including | |
| Standard Amino Acids: | 40 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.939 | 1579.500 |
| % Hydrophobic | % Polar |
|---|---|
| 45.73 | 54.27 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 49.63 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 38.5418 | 15.5234 | 49.3869 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5N | CE2 | TYR- 134 | 3.13 | 0 | Hydrophobic |
| O2A | N | ALA- 188 | 2.81 | 163.67 | H-Bond (Protein Donor) |
| O2N | N | ILE- 189 | 2.7 | 172.92 | H-Bond (Protein Donor) |
| C5D | CD1 | ILE- 189 | 3.9 | 0 | Hydrophobic |
| C1B | CG | PRO- 240 | 4.35 | 0 | Hydrophobic |
| C5B | CG | PRO- 240 | 4.01 | 0 | Hydrophobic |
| N7N | O | VAL- 266 | 3.4 | 137.62 | H-Bond (Ligand Donor) |
| C2D | CG | ARG- 268 | 4.21 | 0 | Hydrophobic |
| N7N | OD2 | ASP- 292 | 2.83 | 168.43 | H-Bond (Ligand Donor) |
| O7N | N | PHE- 338 | 3.18 | 127.9 | H-Bond (Protein Donor) |