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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1yobFMNFlavodoxin 2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1yobFMNFlavodoxin 2/1.000
4h2dFMNNADPH-dependent diflavin oxidoreductase 1/0.478
1ykgFMNSulfite reductase [NADPH] flavoprotein alpha-component/0.473
1fueFMNFlavodoxin/0.471
2ylxFADPhenylacetone monooxygenase1.14.13.920.467
2v5vFMNFlavodoxin/0.464
2w5uFMNFlavodoxin/0.464
2z4w749Geranylgeranyl pyrophosphate synthase/0.461
1ja1FMNNADPH--cytochrome P450 reductase/0.457
1l2tATPUncharacterized ABC transporter ATP-binding protein MJ0796/0.457
2op07PCEnoyl-ACP reductase/0.454
3ojxFMNNADPH--cytochrome P450 reductase/0.454
4y7cFMNNADPH--cytochrome P450 reductase/0.454
4at0FADPossible succinate dehydrogenase/0.449
1ad3NADAldehyde dehydrogenase, dimeric NADP-preferring/0.448
3cgtBCDCyclomaltodextrin glucanotransferase2.4.1.190.448
1akwFMNFlavodoxin/0.443
1mczRMNBenzoylformate decarboxylase4.1.1.70.443
5ab6CAANonspecific lipid-transfer protein, putative/0.443
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.442
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.440
1qvuPRLHTH-type transcriptional regulator QacR/0.440