Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1t9d1MMAcetolactate synthase catalytic subunit, mitochondrial2.2.1.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1t9d1MMAcetolactate synthase catalytic subunit, mitochondrial2.2.1.61.000
1t9c1SMAcetolactate synthase catalytic subunit, mitochondrial2.2.1.60.628
1t9b1CSAcetolactate synthase catalytic subunit, mitochondrial2.2.1.60.593
1t9a1TBAcetolactate synthase catalytic subunit, mitochondrial2.2.1.60.589
1n0hCIEAcetolactate synthase catalytic subunit, mitochondrial2.2.1.60.567
1oc1ASVIsopenicillin N synthase1.21.3.10.481
3t7vSAM3-methylornithine synthase/0.477
1mc5AHEAlcohol dehydrogenase class-31.1.1.10.473
1u1d181Uridine phosphorylase2.4.2.30.472
1q5dEPBEpothilone C/D epoxidase1.140.471
1blzACVIsopenicillin N synthase1.21.3.10.470
3zoiM2WIsopenicillin N synthase1.21.3.10.469
1pkfEPDEpothilone C/D epoxidase1.140.467
1odnAPVIsopenicillin N synthase1.21.3.10.466
2bjsACVIsopenicillin N synthase1.21.3.10.466
1qiqACCIsopenicillin N synthase1.21.3.10.465
1qjfACSIsopenicillin N synthase1.21.3.10.464
2imkGTXAGAP009194-PA/0.463
2wo7ASVIsopenicillin N synthase1.21.3.10.462
3issEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.462
4bb3KKAIsopenicillin N synthase1.21.3.10.462
4yx6FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/0.461
2vbdV10Isopenicillin N synthase1.21.3.10.460
2y6fM9FIsopenicillin N synthase1.21.3.10.459
1uzwCDHIsopenicillin N synthase1.21.3.10.456
2yvwEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.456
4xbjIN5Alanine racemase, biosynthetic/0.456
2iviACWIsopenicillin N synthase1.21.3.10.454
1fmlRTLRetinol dehydratase/0.453
1hb3SCVIsopenicillin N synthase1.21.3.10.453
2c94TSF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.452
2zu9GDPMannosyl-3-phosphoglycerate synthase2.4.1.2170.452
3mjrAC2Deoxycytidine kinase2.7.1.740.452
1bk0ACVIsopenicillin N synthase1.21.3.10.450
4r7uUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.450
1x8lOXRRetinol dehydratase/0.445
7catNDPCatalase1.11.1.60.445
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.444
3sigAR6Uncharacterized protein/0.444
4idgNADPutative UDP-glucose 4-epimerase/0.444
1obnASVIsopenicillin N synthase1.21.3.10.443
2jb4A14Isopenicillin N synthase1.21.3.10.443
2qimZEAClass 10 plant pathogenesis-related protein/0.443
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.443
1iqrFADDeoxyribodipyrimidine photo-lyase4.1.99.30.442
1w0kADPATP synthase subunit alpha, mitochondrial/0.442
1w0kADPATP synthase subunit beta, mitochondrial3.6.3.140.442
1rdwLARActin, alpha skeletal muscle/0.441
4dpwAGSMevalonate diphosphate decarboxylase/0.441
8catNDPCatalase1.11.1.60.441
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.440
3hggCHDCmeR/0.440
4cjx9L9C-1-tetrahydrofolate synthase, cytoplasmic, putative/0.440